BAC Information

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BAC

Clone NameMSMg01-071H21
Chromosome15 (Build37)
Map Location 102,914,415 - 102,914,696
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H21.T7 (MSMg01no071_h21.b1)MSMg01-071H21.TJ (MSMg01no071_h21.g1)
ACCAG295263AG295264
length705714
length of high quality
(start - end)
280 (69 - 348)75 (103 - 177)
definitionCHROMAT_FILE: MSMg01no071_h21.b1 PHD_FILE: MSMg01no071_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:55 2005CHROMAT_FILE: MSMg01no071_h21.g1 PHD_FILE: MSMg01no071_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGTGGCGCTAAACGACTCCTATATGTTCCAAATAACGCGGATTCCC
TGTCTTGTCTCCCTAAAGAGTTACAGCTGTGATGAAGAAGACAGGACTTC
TGCCCTGTGCCTATTGAGCATCGTAAAAGAAGACACAAATATGTCTGTGA
GGGTAAAGGGACACTTGCCATTGGCAGGACATATGGGGCACCTATCCTAG
ACTAGAAGGGCTTCACAATGACACAGGAAAGGCATCTCTCAGTCTTCCCC
CAAAGGATATGAACACTATCTACCATGTGCCAGGGAAAAGGCTACACTGG
CCTATAGTTTGAGTCCTGATTAGTGCCCAGCCAGCAGTTTGTGGCCAGCC
AAACCTAGGCAGGCTTCTTGTTTCTAGCCACAGGGTGTCCAAGACTACAC
TAATGTTGTCCTTCCCACTCCAGCAGGGAAGCTCCATCATGTTCAACCAG
TCTGGATGGCTTTATCAGCTCTCTGTCTTGCTCACATCCAGCCTCATGTC
TGGTTTATCTGACAAGATCTGTGAATGTAGGGCTCTGTGGAGGTTCTTAT
TTTTTTCTCCCTTCCCTTGTTGATATCCGCCTACAGACCACCCCCACCCC
TTGTCATTATTTTCCTCTCACCTCCACCTCCCTTGAACACCCCCCTCACG
TTCATTTGTCTAATTTTGCCTGCTGTTATCTGATTTATTGTCTTTTAATT
ATTAN
CATGAAGTGGTAGCCTGGTGGCGCCTGTGCGTTCAAAAAGGTGACCTATA
GAAGGACCTGCGCATTCCTGTGAAATGTCTAAACCTGAAGAATTAAATAA
GTGGTGGCTGATATTGCAAGGATAGAGCTTAGGGTAGCTGGCGTTTAGAA
ATTTTCTTTCAGCTTTGGAAGAACAGACATAGGAAGGTTGGAACAGGATC
TTTTTTTTTCTTCCTTTTGGTGGATCCTAGGCCTGGACCTCCTCCTATGG
GGATCTGATTTCCTTACTCTGAGCCTAGATCTTCTTCCTTGTTCGGCGGT
AGATGATTCACAACATTGTAGCCCTTTTTGTATGTGACTGATCCCTCTAG
CAGTCTGGTTTCATCTGATAGTTTCTTCTCTACGCTGGCGAATCAGATCC
CATAGTGTCCCCCCCGATTCTTTCATGATCCTGGGTTCCTTCTAGCTGAT
TGACTCTCTTGATGGTCCTAGCCCCTGTATTTGATCCTCTGATTCGTCCG
CTCTTTTTTATACTTACTATGTAATTCCTCCCCCCCTTACCACATATATT
TGGTTATTTCTCTTGGTTGTAGCTACCCCTGTTGTTGCCCTCTGCCTAAT
GTCTGGCTCCTTTTGTTCTTTGTCTTTGCCTCTTTATTCTTTATGTTTCT
TCTGTCTTTCTTTTTTCTGTGCACTCGGTTGGGTCACAGTTCGCAATGTT
CCTAGGTTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h21.b1 MSMg01no071_h21.b1 CHROMAT_FILE:
MSMg01no071_h21.b1 PHD_FILE: MSMg01no071_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:55 2005
         (280 letters)



>mm_chr15_102914215_102914896
          Length = 682

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttacagctgtgatgaagaagacaggacttctgccctgtgcctattgagcatcgtaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 agttacagctgtgatgaagaagacaggacttctgccctgtgcctattgagcatcgtagaa 423

                                                                       
Query: 61  gaagacacaaatatgtctgtgagggtaaagggacacttgccattggcaggacatatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaagacacaaatatgtctgtgagggtaaagggacacttgccattggcaggacatatgggg 363

                                                                       
Query: 121 cacctatcctagactagaagggcttcacaatgacacaggaaaggcatctctcagtcttcc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 362 cacctatcctagactagaagggcttcacaatgacacagggaaggcatctctcagtcttcc 303

                                                                       
Query: 181 cccaaaggatatgaacactatctaccatgtgccagggaaaaggctac-actggcctatag 239
            |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 302 accaaaggatatggacactatctaccatgtgccagggaaaaggctactactggcctagag 243

                                                     
Query: 240 tttgagt-cctgattagtgcccagccagcagtttgtggccag 280
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 tttgagtgcctgattagtgcccagccagcagtttgtggccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 682
Length adjustment: 9
Effective length of query: 271
Effective length of database: 673
Effective search space:   182383
Effective search space used:   182383
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)