Query= MSMg01no073_f08.b1 MSMg01no073_f08.b1 CHROMAT_FILE:
MSMg01no073_f08.b1 PHD_FILE: MSMg01no073_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:22 2005
(578 letters)
>mm_chr15_74036502_74037481
Length = 980
Score = 893 bits (462), Expect = 0.0
Identities = 532/576 (92%), Gaps = 35/576 (6%)
Strand = Plus / Plus
Query: 5 gaattctgggaccaacaactatctgcaaccccagccccagctgaggagctgaggcttcat 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggaccaagacctatctgcaaccccagccccagctgaggagctgaggcttcat 264
Query: 65 cctcagactgcatttaatgcatgtcaggattaagaacaagcaaggctttcttcacagg-- 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcagactgcatttaatgcatgtcaggattaagaacaagcaaggctttcttcacaggaa 324
Query: 123 aaaaacaatcaggaaagcctagatgccacgatacccacacagagtaggccaaatgccaac 182
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 aaaaaaaatcaggaaagcctagatgccacgatacccacacatagtaggccaaatgccaac 384
Query: 183 atctctcaccctagcataggtctgtcaacagccccaaggctgcagcctacaccagggctt 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctctcaccctagcataggtctgtcaacagccccaaggctgcagcctacaccagggct- 443
Query: 243 gctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgccgccgct 302
|||||||||||||||||||||||||||||||||||
Sbjct: 444 -----------------------tgctgctgctgctgctgctgctgctgctgccgccg-- 478
Query: 303 gcctccgccgccaccgctgctacaattctgttagttttggtgcttcgtgcaagtcctctt 362
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 479 ----ccgccg---ccgctgctacagttctgttagttttggtgcttcgtccaagtcctctt 531
Query: 363 cagttccccatcacacctgaccacctggctgttgccgactcttttgtctgccctcttgag 422
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 532 cagttccccatcacacctgactgcctggctgttgccgactcttttgtctgccctcttgag 591
Query: 423 aaagccatggacttggaaacctagtctgtagtcctcttagacaagcttttcccaattcac 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 592 aaagccatggacttggaaacctagtctgtagccctcttagacaagcttttcccaattcac 651
Query: 483 ccacgagatcttcagtcagactctttcctgtcagatgccttggctgtgtggggattaaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ccacgagatcttcagtcagactctttcctgtcagatgccttggctgtgtggggattaaag 711
Query: 543 gagcccagccttgactacctaagctactgctggcag 578
||||||||||||||||||||||||||||||||||||
Sbjct: 712 gagcccagccttgactacctaagctactgctggcag 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 980
Length adjustment: 10
Effective length of query: 568
Effective length of database: 970
Effective search space: 550960
Effective search space used: 550960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_f08.g1 MSMg01no073_f08.g1 CHROMAT_FILE:
MSMg01no073_f08.g1 PHD_FILE: MSMg01no073_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:22 2005
(418 letters)
>mm_chr15_74119812_74120629
Length = 818
Score = 754 bits (390), Expect = 0.0
Identities = 408/418 (97%), Gaps = 7/418 (1%)
Strand = Plus / Minus
Query: 1 ccagtcctgtaaagggagactgaatctgtccatgactcctgcctactgctgaaggcggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ccagtcctgtaaagggagactgaatctgtccatgactcctgcctactgctgaaggcggct 640
Query: 61 tgtgggccctgggatgatgaggggctgtggccaatggggagtgaccagcgtgtggcccca 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 639 tgtgggccctgggatgatgag-------ggccaatggggagtgaccagcgtgtggcccca 587
Query: 121 gatggacagaagactgcagggatggagagtcacccaccgtgctccagcccttcctgaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gatggacagaagactgcagggatggagagtcacccaccgtgctccagcccttcctgaagt 527
Query: 181 cctccctctgctaccgatgtgcttcttttctgcaggtcagaacaatccaggatcggggca 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 526 cctccctctgctaccgatgtgcttctcctctgcaggtcagaacaatccaggatcggggca 467
Query: 241 actgaatcagggcctgtcaggctgatggatgagttgaatggattggtattttggccaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actgaatcagggcctgtcaggctgatggatgagttgaatggattggtattttggccaggg 407
Query: 301 tccagggtggtaaggggcctctcatggaaaggacggctgtcaccactctcgtgtcagtgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tccagggtggtaaggggcctctcatggaaaggacggctgtcaccactctcgtgtcagtgg 347
Query: 361 ctctgtggacttgtttattcacattctgcctctttactgtccacctggcacttgatgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctctgtggacttgtttattcacattctgcctctttactgtccacctggcacttgatgg 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
