BAC Information

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BAC

Clone NameMSMg01-073F22
Chromosome15 (Build37)
Map Location 11,710,997 - 11,711,355
singlet/doubletsinglet
Overlap genenone
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneNpr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073F22.T7 (MSMg01no073_f22.b1)MSMg01-073F22.TJ (MSMg01no073_f22.g1)
ACCAG296686AG296687
length739734
length of high quality
(start - end)
376 (65 - 440)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no073_f22.b1 PHD_FILE: MSMg01no073_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:24 2005CHROMAT_FILE: MSMg01no073_f22.g1 PHD_FILE: MSMg01no073_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
CCACCTTACACACACCAGATGTGGCCTCTTGACCTTGGCCTAAAATTTTG
AGCCAAAGTAAACTCCTTTCTTTTTTCTTACAACTTAGTCAGTCTCTGGT
ATTGCTAATAATGAGAGGCACATACCAAAACAGTGCCTGACTATTGTAGA
CTAAATATGGATAATCTCCTGGGGTACATATGTTCAAATATTAGCCCCTG
TGTGCTGTTACCTGGAATTAAGGGCCTTTTGGGAGGTAGTTGGGTTATAT
GAGGTCATTAGAGTAGAACCCACAGAAGCAATTGGTATTTGCATAAGAAG
TGGTATTGGTAAACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCTCTCCCTCCTT
CCCTTTTACTTCCTCCACCTTTCTTCTCCCTTCCCTTCCCTTTACCTCCT
TTATTCCTTTCTCCCTCTACTTTACTTCCTCTATTCCTTATTCTTTCTTT
TCTCCCCCCTCCTCCCTCTCCCACATTCCCCTTCCCTCTTCTCTCCCCTC
TTTCTTTTTTCCCCATTTTTTATTCTTCCCCCCTTCCCCCTTTTTTTCTC
CTACTCACTTTTTCCTCTTTCTCCACCCCCCCTCTTTCCATTCCCCCTTC
ACCCTTTTCTTTCCACCCCCTTTTTACCTCCTTTTTTTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCCAATGCTTTGATATGTTTTTTTTT
TTCTTTTCACTTTTTGAGACAGCATCTCATGTAACTCAAGCTAGCTTTGA
GCTCACTATATAGTGAAAAATGTCTTTGAATTCCCAATGTTCCTGCCTCA
AACTCTCATGTGCTGAGATTATAGGTGTTGCCCGCCATACTTGGCTCTAT
GCTTATTGTGATAACCAGATTCTTTATTCTGTTACAAGGTTATATATTAC
TTTGTTTCCCCATTGTTTTTTGTTTCGGCTTGACAAGAACGCCCCCCACA
TGCATTTTTTTTTTTACCCCCCTCCCCCCCCTCTATTGTCTACTGTCACT
ATTTCATTCTTCTACCATTAAAAAAATAACATCCTTCTCCTACTACCCCT
TTCCTTTTCTTTTCCCCTTCCCTCCCTCCCTCTCTCCTTCCTTTCCTTCC
CATCCTTCCTTACCTTCCCCTCCTTCCTCTTCCCCACACCCATCCTCATT
TACCTCTTTTTCCCATCCTTTCCTTCCTTTCCTCATTTTTCTTTCCCATC
ATCATCCCCTTTCTTTTCCTTCTCCCTTACCTCCCCCCTTCCTTCCTTAT
CTCCCCCTATCCTTCCTTTTTTTTTTCCTCCCCTCTCCCCTTTCCTTTTT
TTCCCCCCTTTCTTTCCCCCCCCTTTCCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_f22.b1 MSMg01no073_f22.b1 CHROMAT_FILE:
MSMg01no073_f22.b1 PHD_FILE: MSMg01no073_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:24 2005
         (376 letters)



>mm_chr15_11710797_11711572
          Length = 776

 Score =  694 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagatgtggcctcttgaccttggcctaaaattttgagccaaagtaaactcctttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagatgtggcctcttgaccttggcctaaaattttgagccaaagtaaactcctttctttt 260

                                                                       
Query: 61  ttcttacaacttagtcagtctctggtattgctaataatgagaggcacataccaaaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttacaacttagtcagtctctggtattgctaataatgagaggcacataccaaaacagt 320

                                                                       
Query: 121 gcctgactattgtagactaaatatggataatctcctggggtacatatgttcaaatattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgactattgtagactaaatatggataatctcctggggtacatatgttcaaatattag 380

                                                                       
Query: 181 cccctgtgtgctgttacctggaattaagggccttttgggaggtagttgggttatatgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccctgtgtgctgttacctggaattaagggccttttgggaggtagttgggttatatgagg 440

                                                                       
Query: 241 tcattagagtagaacccacagaagcaattggtatttgcataagaagtggtattggtaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattagagtagaacccacagaagcaattggtatttgcataagaagtggtattggtaaac 500

                                                                      
Query: 301 ttctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)