BAC Information

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BAC

Clone NameMSMg01-075D05
Chromosome15 (Build37)
Map Location 23,544,184 - 23,544,335
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18, LOC624863
Downstream geneLOC666989, LOC666999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075D05.T7 (MSMg01no075_d05.b1)MSMg01-075D05.TJ (MSMg01no075_d05.g1)
ACCAG298075AG298076
length672738
length of high quality
(start - end)
373 (39 - 411)177 (76 - 252)
definitionCHROMAT_FILE: MSMg01no075_d05.b1 PHD_FILE: MSMg01no075_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:48 2005CHROMAT_FILE: MSMg01no075_d05.g1 PHD_FILE: MSMg01no075_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
ATAGGAGTCCCCATAGTTGACAGCGTTATTACTCTTATGGGGTTATAGGG
GTCCAGACCTCCCTGCAACGCTTGGCTATATCTGCATCTTTCTCAGCTGC
TTTTAGTACCCATCAGAGGGCAACCATGTTAGGCTTGTGTCTAAAGACAA
AACAAAACATTAGTAATAATGTCAGGGTTTGGTGCCCATTCAAGGAATGG
ATCCCAAATTGGGATGGTCACTGGTCAGCCATTCCTTCAGTCTCTTCTTC
TTTTTTGTCCCAGCATTTCTTTTAGACATGGGCACTTTTGAAGTAATGTC
CATTCTTAACTGCTCCTGATTCCTCCTGTATTAGACATTTTAAGATTTTT
TTTTTTAGTGATATACCAAAATATGCCAGATGAACAACTTTTAAGGTAGG
GGAGATTTATATTGGCTGCAGAATTAGATGTCTTAGCCTATGGATGCCGG
GCTCCATTGCACTACAATCTTCATTGTCTAGATGACTTGTTACTCCCCCC
ACACACACCCACATGCAAGTGCACTGAAAGTACCATGGAAGTACAGATGT
GAACTATTTTGTTTATCTGGAATTACATTATTTTTAAAACTTAAACCTTT
CCACTGGGTGGAGAATGTATTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGTGGAATTGAAATCTACA
TAGTTGTGGACAATATAAAAAATAGAGTGAGTTTACATACACACTGGGTT
AACATGTTTTAAGTTAACAGCTCATGTGATCAACACAGAATCACATTGAC
AGGCCTCTGGTTTTGTTTTTGTTTTTATTGGAGAGGGGTGGAATTTTTTC
TNTCTNTTCGCTTATTTTTTTTTCCTTNTTCCCTCCTTCCCTTTCTTTTT
CTTTCTGTCCTGGTCTCCATTTCTTTTTTTTTCCCCCTCCTTCTTGTTCT
CCCTTTGCCCCTTATTTTTTGGTTTTCTTTTTTTTTTTTTTTTTGTTTTT
TTTTCTGTTTTTGTGTACGGCCTCTCCCCCCCCCTCCTTGTTGTTTTTTT
TTGTTTTTTTTTTTTTTTCTTTTTTTCTTCTTTTTTTTTTCTTCTTTGTC
TATTTCTCCTCTTCCTTAACCCTACTCTTCCTACTCAACTCCCCACTATT
TTTCTCTTTTCTCCCATCATACCTCTATCTTCTGTCACAATATATATTCC
TCTCTCTCTATATTCCTCTCCTACTTTCTTCCCTTACCCCTCTTCTCTTC
TCCCTGCTCCCCCCACTTTTTTCTTCCTACACCTTCCAATTTCCTATACT
TTTTTTCTCATTTATTTTTTATTCTATTTATATTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_d05.g1 MSMg01no075_d05.g1 CHROMAT_FILE:
MSMg01no075_d05.g1 PHD_FILE: MSMg01no075_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:48 2005
         (177 letters)



>mm_chr15_23543984_23544561
          Length = 578

 Score =  248 bits (128), Expect = 2e-70
 Identities = 146/152 (96%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagaggtggaattgaaatctacatagttgtggacaatat-aaaaaatagagtgagttt 59
           ||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct: 201 caaagaggtggaattaaaatctacatagtagtggacaatataaaaaaatagaatgagttt 260

                                                                       
Query: 60  acatacacactgggttaacatgttttaagttaacagctcatgtgatcaacacagaatcac 119
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 acatacacactgggttaacatgttttaagttaacaactcatgtgatcaacacagaatcac 320

                                           
Query: 120 attgacaggcctctggttttgtttttgttttt 151
           ||||||||||||||| ||||||||||||||||
Sbjct: 321 attgacaggcctctgtttttgtttttgttttt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 578
Length adjustment: 8
Effective length of query: 169
Effective length of database: 570
Effective search space:    96330
Effective search space used:    96330
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)