BAC Information

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BAC

Clone NameMSMg01-076E23
Chromosome15 (Build37)
Map Location 59,842,230 - 59,842,472
singlet/doubletsinglet
Overlap genenone
Upstream geneMtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613
Downstream gene4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076E23.T7 (MSMg01no076_e23.b1)MSMg01-076E23.TJ (MSMg01no076_e23.g1)
ACCAG298918AG298919
length844777
length of high quality
(start - end)
249 (103 - 351)---
definitionCHROMAT_FILE: MSMg01no076_e23.b1 PHD_FILE: MSMg01no076_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:14 2005CHROMAT_FILE: MSMg01no076_e23.g1 PHD_FILE: MSMg01no076_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAAATAAATACAAACCAACAATAATAACAACCTAAATTACCATAAC
TCTTTTATCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCGCGGAATTCTCTGACTCTCCGCATGGTTAAATGTGCATCTGAAAATT
GTGATTATCTCTGAAGAAACACAACAGAAGCAATCAAACATGTATGTACC
TCTTATAGGGTAAAACAGAGATCCTGAGGTGTCTGACAAGGAAAATAGAA
ATGGCCTCTTTGATTCTGCAGATTGTTGTTTTTTAAATCTTAATTATTGT
CTCCAAAAATTAGAATTAGTCTAGGGAGATGGAATGGGAAGGTGTTGCTG
TTGTTGTTGTCCTGAACACGCTTAGCTATTTTTTTACATATTTTTAAATA
AATTTGAATTTATATGAATATTATAAACTACACTTTATTCTATGTTAAAA
AATATTAAAAATAATCATTTATTTTAATATTAAAATTTATTGAAATTTCT
TCATATCATATTATACTTATCTCTTTATCTTTATTATCATATAATAATTA
TAATTCAAATTATTCAAAACTTTATCTCCTATACTAATTTTTTTCCCATC
AATCTTCCCACTCTAACATAATTATTTTATACTTTTTATCTCCTATTTTC
CTCGCCTGCATACATCATTCCGACTCCTATATTTATTATATATTTCTATT
TTCTTATCTCCCCCCTCTTTCATTATCTTTCTTTTCCTCCCTTTTATTTT
TTCACCCTCATTCATCTCCTATCACCCACCGCCCCCCCTACTTCTATTCA
TCCTCTCTCCATCTACCGACATCTCGCCACCTACCCTCACCCGT
AAAAAAAAAAAAAAAAAANNAAANANAAANCACCAATCACACCAACAACC
CCTACCGATGACACGAGAAGCCTGGNGGNGCCGGTTTCTTACCCGANGNG
ANNNANAGAAGTTCCAAGAACAGCGGGGGNNNNANNAGGGNNNNGGNAGN
GAGAGGNNNGGGANNANAAGACCGCCCACACAGAGGAGCAAAGAAGCAGC
ACGCCAGCACNGGAGACACCACCACACGAGGAAACAGAGACACGACACAG
AAGCCAGAAACAACGCCAACACACCCGGCGGAGGGAGACCAAGGACAGAA
ACACTTTTACAAGCGAGAGCCCCACACCCGAGAGACAGACACCACACACG
CCACCAGAGACCAGAAATTTTTTTTTTTGCCGAGCCAGAAACCACCCCAG
AGCCCAAAGCTTTTCCACCCCCCCCTCTGAGTCACTGGATAAGTGAAACC
CTAGTAAAGCCATAGGGATCATCTGAGTTTCACCCGAACCTACGTGTTGT
CCTGAGACCCATGTAAAGAAGGCTTCTGCTTGACTCTGCCACCTGGTGGC
ACTCCGTGATGAGCTTCACGCTTTCCCATAAAGGATGTCCTGTCAGCCAA
GACCATGCCCAAAAATCAGACCCAAAAAACTGACCCAGCATCAACAGAAA
CACCAAAACCACAAACCTAAATATGGCACAATACAAAAACAAAAGCACCC
GCAGTATTTTTTTTTTTTTTGGTGATAGCATGCTCAGTATTCCTAGAAGG
GAAACCCGAGTGATAATAACACGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_e23.b1 MSMg01no076_e23.b1 CHROMAT_FILE:
MSMg01no076_e23.b1 PHD_FILE: MSMg01no076_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:14 2005
         (249 letters)



>mm_chr15_59842027_59842676
          Length = 650

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgactctccgcatggttaaatgtgcatctgaaaattgtgattatctctgaa 63
           |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 446 ggaattatctgactctgtgcatggttaaatgtgcatctgaaaattgtgattatctctgga 387

                                                                       
Query: 64  gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 327

                                                                       
Query: 124 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcag-attgttgtttttt 182
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcagaattgttgtttttt 267

                                                                       
Query: 183 aaatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 207

              
Query: 243 ttg 245
           |||
Sbjct: 206 ttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)