BAC Information

Click to search

BAC

Clone NameMSMg01-076L09
Chromosome15 (Build37)
Map Location 13,794,038 - 13,794,267
singlet/doubletsinglet
Overlap genenone
Upstream geneRnasen, Cdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076L09.T7 (MSMg01no076_l09.b1)MSMg01-076L09.TJ (MSMg01no076_l09.g1)
ACCAG299222AG299223
length725765
length of high quality
(start - end)
219 (40 - 258)228 (129 - 356)
definitionCHROMAT_FILE: MSMg01no076_l09.b1 PHD_FILE: MSMg01no076_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:47 2005CHROMAT_FILE: MSMg01no076_l09.g1 PHD_FILE: MSMg01no076_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGATCCGCGGAAT
TCCTGATCTTCCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAATGGATTAATTGATGGATTTTCATATATTAAACCATCCCT
GCATCCCTGTAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTATTG
TGTTCTTGAATTCGGTTAGAGAGAATTTTATTGAGTCTTTTTGCATCGAT
ATTCACAAAATAAATTGTTCTGAAGTTCTCTATCCTTGCTGGGACTTTCC
GTGCTTTATCCACCCTACTAATACTGACTTCCCTATCTGACTTGCCTTTA
TTATCTTCTACCTCTATTTTGTCACTTCTCTTGTTGCTCTCTGCTTATTA
TCATCCTCTTCGATATTCTGATTCAATTCCCTATTTTTTTAATCAGCTTC
TGGATTCTCTTTTGTTTTGCCCTAATCTTATTAATTGTTTCTATCCCCTC
ACCTGTAATCTTACCCTTTTTCAATATCCATAAACTCTCCTCGCTTTACC
CTTCTGTTTCCCTGCCTTCACCGCCTATTTCTTAATACTTATCTCATTCA
TTTTTAAACCCTATTATTTTAATTACTTTCCCTTCTATCTTTATCCTTCC
TGCTCTTCGCCTACCCTCCCTCTCT
TTTTNNNNNNNNNNNCCCNNCCNTTCCTTTTTTCTTCCTCCTCTCTCCTT
TCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTGCTACCTGTCGGAAAA
AAAAACTTTATGTATTTAAAGAGATATGATCAAAAAATTAAGTGTTTTGT
ACCATAGAATTGCTCCTATGAGAAATTTATTATTTTTATAGAAAATTTTG
AAGATGTTGGTTAAAAATTAATTGTATAATACTACTTCTATTATTAGCTT
ATGAAAACTTATTTTTGTCACCAGCTATGTAATTATCAATTTTATTAATT
GTATCATAGAAACTTCCTTTATCCTCTATTGATTTTCCTGTAAGCTTTGC
AAGAATTCTAAGCCACATTGATCATTATACTTAGATTCATAGTCACCATG
GTAGAGCTAGTCATGAAACCACATTATGTGTCACACCTGGCATCCTAAAA
TCACATGGATACGAATAAAGCGCATTCTTCCTAATGTAGAGAGGCCACCA
TGTTTCCCAGGCGCTTTAGAAACTTCTAACATCACGGTTTGAGAATCATG
TGAGAATGCGTCCTCTAACTAAAGAGAGCATTAAGAATGTGAATCCTCTT
ACGCTTCACAACTTCTTCCAACTCCTTTTTTGCTCTTATATGTATCTTCC
ACACTGGTGAGCTATGAATCATTTGCCCCCCCGCAAAGTCTTATGGTGTG
AATTATGCAACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_l09.g1 MSMg01no076_l09.g1 CHROMAT_FILE:
MSMg01no076_l09.g1 PHD_FILE: MSMg01no076_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:47 2005
         (228 letters)



>mm_chr15_13793838_13794467
          Length = 630

 Score =  402 bits (208), Expect = e-117
 Identities = 224/230 (97%), Gaps = 2/230 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggtgctacctgtcggaaaaaaaaa--ctttatgtatttaaagagatatgatcaaaaa 58
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 201 agaggtgctacctgtcggaaaaaaaaaaactttatgtatttaaagagatatgatcaaaaa 260

                                                                       
Query: 59  attaagtgttttgtaccatagaattgctcctatgagaaatttattatttttatagaaaat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaagtgttttgtaccatagaattgctcctatgagaaatttattatttttatagaaaat 320

                                                                       
Query: 119 tttgaagatgttggttaaaaattaattgtataatactacttctattattagcttatgaaa 178
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 321 tttaaagatgttggttaaaaattaattgtataatattacttctattattagtttatgaaa 380

                                                             
Query: 179 acttatttttgtcaccagctatgtaattatcaattttattaattgtatca 228
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 acttatttttgtcactagctatgtaattatcaattttattaattgtatca 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 630
Length adjustment: 9
Effective length of query: 219
Effective length of database: 621
Effective search space:   135999
Effective search space used:   135999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)