BAC Information

Click to search

BAC

Clone NameMSMg01-078A14
Chromosome15 (Build37)
Map Location 99,370,179 - 99,370,483
singlet/doubletsinglet
Overlap genenone
Upstream geneCcnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2
Downstream geneLOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078A14.T7 (MSMg01no078_a14.b1)MSMg01-078A14.TJ (MSMg01no078_a14.g1)
ACCAG299467AG299468
length709716
length of high quality
(start - end)
244 (40 - 283)315 (70 - 384)
definitionCHROMAT_FILE: MSMg01no078_a14.b1 PHD_FILE: MSMg01no078_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:14 2005CHROMAT_FILE: MSMg01no078_a14.g1 PHD_FILE: MSMg01no078_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTAAACGATCACTTTCCAAGAGGACCGCGGAATTCA
ATAGTTTCCTATAACTTAAAAGTATCCCTCAGGGCTAGGCATGGCAGCCT
AGTCCTCTAATCCCAGCACTGAGGAGAGGCAGGCAGTTACCTGAGTTTGA
GGCCAGCCTGGTCTACAGAGCAAGTTCTAGAACAACCAGGGCTACACAGA
GAAACCCTGTGTACTGGCTAGTTTTGTGTGTCAACTTGACACAGGCTGGA
GTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAAATCTTTTTTGTAGATC
CAGCTGTAATGCATTTTCTCAATTAGTGGGAGGTCCATTGTGGGTGGGAC
CATCTCTGGTCTGGTAGTCTTGGCTCTATAACAGAGCATGCTGATTAAGC
CAGTGGAACCAAGCCAGTAAGTAACATCCCTCCTTGGTTTCTGCATCAGC
TCCTGTTTCCTGACCTGCTTTGAGTTCAGCCCTGACTTCCTTTGTTGATG
ATCAGTATTGTGTAAATGCACCCTTGATTTTATTTTCTTTTCCTTTTCTC
CCCTCTTTTCTTATTTTTTTTTTTTTTCTCCTTCCCTCCTCTTTTCCCTC
ACTTTCTTTTCTTCTTCCTATTCTCTTATTCCCTTCTTTTTACCCCCTCC
TCACCTCCCCTTTCATTTCTCTCTCACTTCTCCTTTTTTTATCACCCCTT
TCAACCCTG
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGGGTGGACGCATTTGGGGGGGGGGAGAGA
CAGCAGAAAAAGGGGAGTCACTAGGCACAGCTTCCGTTCACAGGGAAGGC
CCCAGGCAGAAGGGACCCTTGAGCTCCCTGGGTTCCCAGCTTCTCAGCTC
TCTGATTGGTTGGTTAATGGGTCACACCTTTAGTGTTAAGAGCCTCTGGT
TGGATAACCTAGGCCCATGTTCTGGCCTGGTGTTCTCTGACGTTCTGTGC
AGGGATCAGAGGCTGTGTCACCCTCTTCTTCCTTGAAAAGTCCCCCACAG
GAGAGAAACTATTTCTTGCACAGCGGAATTGAATGCTGAGATACCACATG
CAGATGTGGCTGCCCATGTTGACGTCCACCAGCCACGTGAGACAAGTGAG
CACTTCACCTGTGACTGACCCTCATGGACATGACTCACAGACCCGAGCTG
TATGCTGAGATTTAAGGACGTTGAATAACAAGCAGAACTCACTTTATTAA
TAACTTTTCCTATTGATTGCGTGTTGATAGGCCACTATCTCAGGTATGCT
GATGTACAATACAACCCCTTACCCAACTTGATTTTACCTTTTCGCTTTTT
TTAAACACTTTTTCCCCGTATTCATTAACAGCGCTTAAAACTGCATGCGG
GCATCTGGCTCTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_a14.g1 MSMg01no078_a14.g1 CHROMAT_FILE:
MSMg01no078_a14.g1 PHD_FILE: MSMg01no078_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:14 2005
         (315 letters)



>mm_chr15_99369977_99370684
          Length = 708

 Score =  526 bits (272), Expect = e-154
 Identities = 300/312 (96%), Gaps = 7/312 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggtggacgcatttggggggggggagagacagcagaaaaaggggagtcactaggcacagc 62
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 203 gggtggacgcatttggggggcgg-agagacagcagaaaaaggggagtcactaggcacagc 261

                                                                       
Query: 63  ttccgttcacagggaaggccccaggcagaagggacccttgagctccctgggttcccagct 122
           |||     ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 262 ttc-----acagggaaggccccaggcagaagggacccttgagctccctgggttcccagcc 316

                                                                       
Query: 123 tctcagctctctgattggttggttaatgggtcacacctttagtgttaagagcctctggtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctcagctctctgattggttggttaatgggtcacacctttagtgttaagagcctctggtt 376

                                                                       
Query: 183 ggataacctaggcccatgttctggcctggtgttctctgacgttctgtgcagggatcagag 242
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 377 ggataacctaggcccatgttctggcctggtgttctctgacgttctgggcagggatcagag 436

                                                                       
Query: 243 gctgtgtcaccctcttcttccttgaaaagtcccccacaggagagaaactatttcttgcac 302
           ||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||
Sbjct: 437 gctgtgtcaccctcttcttccttgaaaagtagccca-aggagagaaactatttcttgcac 495

                       
Query: 303 agcggaattgaa 314
           ||||||||||||
Sbjct: 496 agcggaattgaa 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 708
Length adjustment: 9
Effective length of query: 306
Effective length of database: 699
Effective search space:   213894
Effective search space used:   213894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)