Query= MSMg01no078_f18.b1 MSMg01no078_f18.b1 CHROMAT_FILE:
MSMg01no078_f18.b1 PHD_FILE: MSMg01no078_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:40 2005
(507 letters)
>mm_chr15_87554160_87555067
Length = 908
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%), Gaps = 3/501 (0%)
Strand = Plus / Plus
Query: 7 attctgaaggttacgtgtggccatactttataaaaaccaaacaaaactgggttcctccca 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctgaaggttatgtgtggccatactttataaaaaccaaacaaaactgggttcctccca 266
Query: 67 ggagtcaacatagggccctgaccatagctagctgagtagca-tacacaggtgtgcctagg 125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 ggagtcaacatagggccctgaccatagctagctgagtagcaatacacaggtgtgcctagg 326
Query: 126 ctcccatcagtgttgtgggtcaccacagaactccccgaatgagatatgaggggggaaaca 185
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 ctcccatcagtgttgtgggtcaccacagagctccccgaatgagatatgaggggggaaaca 386
Query: 186 tctaaacttcagaaggacaaagtcagtcccacactctcctgccttgacctaagatagaga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctaaacttcagaaggacaaagtcagtcccacactctcctgccttgacctaagatagaga 446
Query: 246 tacttgggtctaaaggggattctcaattgagaaaacaccttcatacatttgtagtgtttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tacttgggtctaaaggggattctcaattgagaaaacaccttcatacatttgtagtgtttt 506
Query: 306 cctaattagtgactgatgtgggagggtccagcccatcgcgagctgtgctacccctcgtaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cctaattagtgactgatgtgggagggtccagcccatcgcgagctgtgctacccctcgtaa 566
Query: 366 gatgatggacggtcctgagtgctataagaaagcaggctgagcaagtcatggggaacaagg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gatgatggacggtcctgagtgctataagaaagcaggctgagcaagtcatggggaacaagg 626
Query: 426 cagtagttgcattctttcatgacctctgcatcagttcctggtctggttttcttctat-ga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 627 cagtagttgcattctttcatgacctctgcatcagttcctggtctggttttcttctattg- 685
Query: 485 tacaaaccctaactaagatac 505
|||||||||||||||||||||
Sbjct: 686 tacaaaccctaactaagatac 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 908
Length adjustment: 10
Effective length of query: 497
Effective length of database: 898
Effective search space: 446306
Effective search space used: 446306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_f18.g1 MSMg01no078_f18.g1 CHROMAT_FILE:
MSMg01no078_f18.g1 PHD_FILE: MSMg01no078_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:40 2005
(487 letters)
>mm_chr15_87725855_87726741
Length = 887
Score = 557 bits (288), Expect = e-163
Identities = 351/382 (91%), Gaps = 20/382 (5%)
Strand = Plus / Minus
Query: 124 aaaaaccaaaaaccaaaaacaac-aacaacaaaaaagaaaatacactagaatggtgttat 182
|||||| ||||| |||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct: 472 aaaaacaaaaaaacaaaaa-aacaaaaaacaaaaaagaaaatacactagaatggtgttat 414
Query: 183 agttttacccacactgcctaccagaagtgtggatctcctcctatctgttccatccactga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agttttacccacactgcctaccagaagtgtggatctcctcctatctgttccatccactga 354
Query: 243 tgaccttccttgggtttgtctcttcaatg----------------ccaccaagatgtggc 286
|||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 353 tgaccttccttgggttcgtctcttcaatgctgcctgtccttggaaccaccaagatgtggc 294
Query: 287 ctctctgtctcctattttcacttagagcactggtttttgtgtttttgcaaatggcagcat 346
|||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||
Sbjct: 293 ctctctctctcctattttcatttagagcactgttttttgtgttgttgcaaatggcagcat 234
Query: 347 ttcctgttgttgctggctaaagagtatacttttgcccggatgggtggtttcacatattcc 406
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 233 ttcctgttgttgctggctaaagagtatacctttgcccggatgggtggtttcacatattcc 174
Query: 407 ctcatgtctccctgggaactcattaccttgtag-aatcctgaaagacccacaacgtgagg 465
||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 173 ctcatgtttccctgagaactcattaccttgt-gtaatcctgaaagacccacaacgtgagg 115
Query: 466 actcccccacgttctgactcag 487
||||||||||||||||||||||
Sbjct: 114 actcccccacgttctgactcag 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
