BAC Information

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BAC

Clone NameMSMg01-078H11
Chromosome15 (Build37)
Map Location 64,664,452 - 64,664,765
singlet/doubletsinglet
Overlap geneAdcy8
Upstream geneAI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078H11.T7 (MSMg01no078_h11.b1)MSMg01-078H11.TJ (MSMg01no078_h11.g1)
ACCAG299794AG299795
length705698
length of high quality
(start - end)
221 (64 - 284)314 (74 - 387)
definitionCHROMAT_FILE: MSMg01no078_h11.b1 PHD_FILE: MSMg01no078_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:48 2005CHROMAT_FILE: MSMg01no078_h11.g1 PHD_FILE: MSMg01no078_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAAATTGCGGCGCTAAACGACTACTATACGGAGAGGAGGCGCGGAA
TTCCAGATATCCATCTAGAAAAGGGATAAATATATATTTATCTCTGCTTC
CTCTCTCTCTCCTCTCTCCTTCCCTTCCTCTCACTCCCTTCCCTCCTCTC
TCCTTCCCTTCTCCTCCCCTCCCCTCCCCTCCCCTTTCCCCTCACCTCCC
CTTTTCCCTCCCCTCCCTTCCCCTCCCCTCCCCTCCCCTCCTCTCGTCTC
CTCTCCTCTCTCCTCCCTCCCTCTCCCTCTCTCTGAGAGACTGACAAGAC
CATGCATGGTTTGTGCATAGGGCCATATGTGTGCCCTATCACCAAGGAGA
TTTGAGGACCTCTCAATGCCTTTATGTGACCACCAAGCAGCTCTTGATTC
TGGGGGCCCCCCCCGCGGTCTGAATACTCACGTCCTGAGCGCGTTATCTT
CCTAATCGCCCAGCTGAGAGGTATGGAATTCCACAGAAGGGAGGGGGGTG
ACAGCGGAGTAATCAAGAAGGGCGTACGATGATGATACGCGTCTCGGCTA
GAATGATGTATGTGTCTACAGATTGGGACGCGCCTATTTGCGCTGTTGAC
CACTGACGCGGTGTGGAGATTCTCCCACCTTAAAGATATTGGTGGGGGAT
TCGATTTAGGATAGCTAGGAGAGGCAGCCTGTGCAAACCCCGACACTTGG
GGAAN
ACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACATCTGGATCTGTAGGCTGCAGGAA
GAGACCACCTTGAGCCTCTGGCCTAGCTTGAGCTTCTGAAACCCTAAGAT
TCCCCAGCCCCCAAGTGACACACTTCCTCTAACAAGGCCACACCTCCAGT
AATACCATTCCCTGTAAGTCTGTGGAGGCCATTTTCATTCAGACCACCAC
AGCCACCAACGTTCTGACTTTGTAAATAGGTGATTAAATGTGTGGATTGT
GAGCTAAGTTTTAGTTAGTAAAAGAACCTCTGTGTATATCTTTGCTGTAT
ACTTCCCAAATGACCCTTTGTTACTATTTGGGGTTTTTGATTGTTTGATT
TGATCTCCACCCCCCCTTTTTTACACATTTAACTTTACTCCTTTTTCTAC
TACCTTATCCCTCTTTCCACTTTTTATTTTCTGTTTTCCTTTTTTCATTA
ACATTTTATAACATTAATACTTCGACCTTTTCTATGTTCCAATCCTCATG
TAATACCCCCTATTCATTTTTTTTCCACTATCCTCTTTCTTCTACTCTTT
CCTCTCACATCCCTTTATTCTTTCGTACTCTCCCTATTCACCTTCTTTCC
ACTCTCATTCGCTCGACTATCCTCTCCACTTCTTCCCCTTTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_h11.g1 MSMg01no078_h11.g1 CHROMAT_FILE:
MSMg01no078_h11.g1 PHD_FILE: MSMg01no078_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:48 2005
         (314 letters)



>mm_chr15_64664074_64664787
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatctggatctgtaggctgcaggaagagaccaccttgagcctctggcctagcttgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tacatctggatctgtaggctgcaggaagagaccaccttgagcctctggcctagcttgagc 633

                                                                       
Query: 61  ttctgaaaccctaagattccccagcccccaagtgacacacttcctctaacaaggccacac 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttctgaaaccctaagatttcccagcccccaagtgacacacttcctctaacaaggccacac 573

                                                                       
Query: 121 ctccagtaataccattccctgtaagtctgtggaggccattttcattcagaccaccacagc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctccagtaataccattccatgtaagtctgtggaggccattttcattcagaccaccacagc 513

                                                                       
Query: 181 caccaacgttctgactttgtaaataggtgattaaatgtgtggattgtgagctaagtttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caccaacgttctgactttgtaaataggtgattaaatgtgtggattgtgagctaagtttta 453

                                                                       
Query: 241 gttagtaaaagaacctctgtgtatatctttgctgtatacttcccaaatgaccctttgtta 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctagtaaaagaacctctgtgtatatctttgctgtatacttcccaaatgaccctttgtta 393

                         
Query: 301 ctatttggggtttt 314
           ||||||||||||||
Sbjct: 392 ctatttggggtttt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)