BAC Information

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BAC

Clone NameMSMg01-078P07
Chromosome15 (Build37)
Map Location 5,921,433 - 5,921,924
singlet/doubletsinglet
Overlap genenone
Upstream geneC7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358
Downstream geneLOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078P07.T7 (MSMg01no078_p07.b1)MSMg01-078P07.TJ (MSMg01no078_p07.g1)
ACCAG300164AG300165
length675808
length of high quality
(start - end)		499 (49 - 547)---
definitionCHROMAT_FILE: MSMg01no078_p07.b1 PHD_FILE: MSMg01no078_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:26 2005CHROMAT_FILE: MSMg01no078_p07.g1 PHD_FILE: MSMg01no078_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATGGCACGTCTTTTATTTTGTAAATAATGATTAAAGGGTA
TCTTGTGTTCAAATAAAAGTCCATAGAAGCTTCACTAAATTGTCAAACAT
ACTATAAAATTATATAAAATGAAGTCTGAATGAAAACTTTTATCCTCATT
GATAAATAGTTAAGTAAAACTAGAAAGCATAATTTGGATATTATAGTGCC
ATTTTGACAGCTAAGTAGTAAGTAAATAGATAAATTTCATTTGAAATACA
CTTTACAAAATTTCATTTGCTTTAAATATACGTTTCAGAAGACAGTTCCA
AGTAACATGTTCATATGCACTCTTCAACAAAAAGCTCAAGCCAGTTTACT
ATACACAGACATGACTTGTCCTCAGACCCACATTGTCCTATCGATGAGCA
AGTCGTTGAAGCAACTGTGCCACATTTTCTTAATCTGAATAGTAAAGGAA
ATGAACTAGATCTGAAATTTGAAAATGGAGATCTTGCGGTTCATTTTCAG
AGTCCCATTAAAGTTAAAAATATATAAGCCATACATGCTCTTTTTAATAA
TCTCAGCGCTCAGGATAATGAGAAAAAATAACTTCAAGTGTTAGGCCAGA
CTAGGCTTGCCAGTGAGATCCGAGG

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNTTTTTTTT
TTTTNNCTTTTTCNCNNNNNNTCNNNNNCCNNNNCNNNNNNNNTTNCNCN
CNNNNNNTCCCCCGCTACCTTCNNNNTTTCNCCCCTCCGGGTTTTTCACG
CTCCANNTCCCCCTGCGCCTCCCTGTCCTCGGCCACGCCAAGGGTTATCG
CATCTTTTGAATAGCTCTATATACGAATTTAGCGAATACTTCGTAATATA
CCGGCTCACTTTCCCTTCTATGCTTTCTTTATCTCCTCCTGCTTTTATGC
TCGCAGGCGTGGGATCCCCTACGTTCGACGTTCGTCCATTACGGCTTCGC
GCGGGTTTGAGTGGAGGCGGGCGCTCGGAGCTGGATGGCATCCTGCACCA
ACTGCGTAGTCTTCTATTACCATATTTTGATTGATCTCTTATTCTTCGTT
GCGTTACCCTCCTCNNNNNNNNNNNNNNNNNAAGAAGCCCTGGCAGCTCT
TCCNCTCTCGTNNAAATCCTTTTCAAGGGCTNGCTCGCCCGCCAGTGTCA
ATTAGANTGCGGGGTTTAGGGGGCCCCCTGTGAAGGGGGGGGGGGCCCGG
GGCCCCCGTGAGGGNCTCGCGGCCAAAAGAATCACCAATATTTTTTAAAA
GGGGGTGGGGAAACAAACCCCTTTAAATTTAGAGGGAAAAAAGGGGGTAA
ATCCCCCGGGGGGGGGGAGTAAAAAAAATTTTCCCCCCCGGGGGAAAAAG
GGGAAAATTTTTAAAATCGGGGGCCTCAAGGGGGGGTGAAAAAGGAATAT
TCCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_p07.b1 MSMg01no078_p07.b1 CHROMAT_FILE:
MSMg01no078_p07.b1 PHD_FILE: MSMg01no078_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:26 2005
         (499 letters)



>mm_chr15_5921230_5922124
          Length = 895

 Score =  874 bits (452), Expect = 0.0
 Identities = 484/496 (97%), Gaps = 4/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcatggcacgtcttttattttgtaaataatgattaaagggtatcttgtgttca 63
           ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctcatggcatgtcttt--ttttgtaaataatgattaaagggtatcttgtgttta 261

                                                                       
Query: 64  aataaaagtccatagaagcttcactaaattgtcaaacatactataaaattatataaaatg 123
           |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||
Sbjct: 262 aataaaagtccatagaagcttcactaaattgtcaaac--actataaaatcatataaaatg 319

                                                                       
Query: 124 aagtctgaatgaaaacttttatcctcattgataaatagttaagtaaaactagaaagcata 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 aagtctgaatgaaaacttttatcctcattgataaatagttaaggaaaactagaaagcata 379

                                                                       
Query: 184 atttggatattatagtgccattttgacagctaagtagtaagtaaatagataaatttcatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttggatattatagtgccattttgacagctaagtagtaagtaaatagataaatttcatt 439

                                                                       
Query: 244 tgaaatacactttacaaaatttcatttgctttaaatatacgtttcagaagacagttccaa 303
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 tgaaatacactttacaaaatctcatttgctttaaatatacatttcagaagacagttccaa 499

                                                                       
Query: 304 gtaacatgttcatatgcactcttcaacaaaaagctcaagccagtttactatacacagaca 363
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaacatgttcatatgcattcttcaacaaaaagctcaagccagtttactatacacagaca 559

                                                                       
Query: 364 tgacttgtcctcagacccacattgtcctatcgatgagcaagtcgttgaagcaactgtgcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgacttgtcctcagacccacattgtcctatcgatgagcaagtcgttgaagcaactgtgcc 619

                                                                       
Query: 424 acattttcttaatctgaatagtaaaggaaatgaactagatctgaaatttgaaaatggaga 483
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 acattttcttaatctgaatagtaaaggaaatgaactagatctgaaatttggaaatggaga 679

                           
Query: 484 tcttgcggttcatttt 499
           ||||||||||||||||
Sbjct: 680 tcttgcggttcatttt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 895
Length adjustment: 10
Effective length of query: 489
Effective length of database: 885
Effective search space:   432765
Effective search space used:   432765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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