Query= MSMg01no080_f24.b1 MSMg01no080_f24.b1 CHROMAT_FILE:
MSMg01no080_f24.b1 PHD_FILE: MSMg01no080_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:15 2005
(538 letters)
>mm_chr15_7979896_7980833
Length = 938
Score = 621 bits (321), Expect = 0.0
Identities = 336/341 (98%)
Strand = Plus / Minus
Query: 6 gaattctaggtttatttctatttccttaagcagcttttttccttaagcaatttaatgttt 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattctaggtttatttttatttccttaagcagcttttttccttaagcaatttaatgttt 282
Query: 66 ttcttttctttttgtgatggtgggatagaatcaggagctcatacgtgctagcaagtgttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcttttctttttgtgatggtgggatagaatcaggagctcatacgtgctagcaagtgttc 222
Query: 126 catcttaagctgtaactgttggagttcaggaatttttccacaaaccatacgcacaccagt 185
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 221 catcttaagctgtaactgttggagtttaggaattgttccacaaaccatacgcacaccagt 162
Query: 186 taagcaagaacaggttactgaatgcacaccctaatactgaatgctcaggaccacaaaaag 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 161 taagcaagaacaggttactgaatgcacaccctaatactgaatgttcaggaccacaaaaag 102
Query: 246 gactctagagcctaaatgtggcatcagtctttcctcagggaagacttttttataggaaaa 305
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 101 gactctagagcctaaatgtggcatcagcctttcctcagggaagacttttttataggaaaa 42
Query: 306 gctagcttccaaagtttaaaagcaagcagggaagtggtatg 346
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gctagcttccaaagtttaaaagcaagcagggaagtggtatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_f24.g1 MSMg01no080_f24.g1 CHROMAT_FILE:
MSMg01no080_f24.g1 PHD_FILE: MSMg01no080_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:16 2005
(512 letters)
>mm_chr15_7833293_7834203
Length = 911
Score = 864 bits (447), Expect = 0.0
Identities = 493/509 (96%), Gaps = 5/509 (0%)
Strand = Plus / Plus
Query: 5 agtggtggtggaagcctttaatcccagcacttgggaggcagaggcaggtggatttctgag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agtggtggtggaagcctttaatcccagcacttgggaggcagaggcaggtggatttctgag 266
Query: 65 ttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacagagaaac 124
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 267 ttcgaggccagcctggtctacagagtgagttccaggacagtcaggactacacagagaaac 326
Query: 125 cctgtcttgaaaaaccaaagaaccaagggggcagggggaagagtttgaattcccaattcc 184
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 327 cctgtcttgaaaaaccaaagaaccaaggggg--ggggggagagtttgaattcccaattcc 384
Query: 185 actgttgtttaaacaagagcagggcctcttatagctcaggctagccttgaacttattcca 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 actgttgtttaaacaagagcagggcctctcatagctcaggctagccttgaacttattcca 444
Query: 245 tatcttcagctatagctcaggctggcctccaattctccccatgtgcaatcacctgttaga 304
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 445 tatcttcagctatagctcaggctggcctccaattcaccc-atgtgcaatcacctgttaga 503
Query: 305 tgctgggattgcagacactgtta-tcatacataacaattcttggtatcagacctacagat 363
|||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcttggattgcaggcactgctaatcatacataacaattcttggtatcagacctacagat 563
Query: 364 cttggcccattctttgtgctcaaatagaaaagaagttaaaccctcaaaatactatcgcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 cttggcccattctttgtgctcaaatagaaaagaagttaaaccctcaaaatactattgcta 623
Query: 424 tgttcttctcaattcattgggaataataatttctctattttttttatttaccttttttgg 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 tgttcttctcaattcattgggaataataatttctctattttttt-atttaccttttttgg 682
Query: 484 cttaaatttatagctttgtagatactaag 512
|||||||||||||||||||||| ||||||
Sbjct: 683 cttaaatttatagctttgtagacactaag 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
