BAC Information

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BAC

Clone NameMSMg01-082A01
Chromosome15 (Build37)
Map Location 83,269,447 - 83,269,689
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359
Downstream geneTtll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A01.T7 (MSMg01no082_a01.b1)MSMg01-082A01.TJ (MSMg01no082_a01.g1)
ACCAG302473AG302474
length691679
length of high quality
(start - end)
141 (69 - 209)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no082_a01.b1 PHD_FILE: MSMg01no082_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:23 2005CHROMAT_FILE: MSMg01no082_a01.g1 PHD_FILE: MSMg01no082_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACAAATTGCGGCGCTATACCACTCCTATATTAATACATCCGCGGAATTC
AGGGATCTTAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTGGTATCG
GCTTCTGCAATACCGAAAGGATCTCCCATCTCGGCTCCATTGTTTGTGCT
TGTGGGAATATCTACCACATCCACAGGGGCAACTGGATCAGGAGCCTCAT
TCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCCATCTGG
TCCTGTGGAAACACACAAACACACCCTCTCGCCCATGTCAATACCAGATC
TGGCCGACCCTCTCCAAATATCCCGGACAGAAGGCCCACCTACAGGTGGC
TGCTGACGAGGCATAGGGAGGCGGCACAAAAGCTAATTCTCCTTCTCTCC
TCCACCTCGCCTCCTCCATTTTGCCCTTTCTGTCCACCCGACAACACCGT
GCCTCCTTTCTTTTTCCTTTTTCCTTTTAAGCCCTTTTCCTCCTCCCGAC
ATACTTTCTTGTTGTTTTGTACCCGATCTTCTGACCTGTCTTGACTGCCT
CTTATCCCACCTTCAAACCGCAACCGAATTCCTTATATCCCCATCACCCC
CCACCCAATCTACTCATACCTACCCCACCAAAGGCTCTATGGCCACATTA
AAGCTTTAATTACCTATTTCGGATTTATTTGTTTCCCCCCT
TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTCATGCTTTTGGAATTAAGGAATCATTGTCC
AATGCAGTGGCCACATGTAAGTTGAGTGCTGGTCTAGAGTGCTTCAGCCT
TTTGGTTTAGTTGAGGGTTTTAACTTTCCCTAGGTATAAAAGTAATTCAG
GAGGCTTTTCTATTGCCCCCTTTATCTTCCAAATAAGTAACATGGAGACC
TGGTATTTCTTACTAAAAGCTTCAGGCTCTAAAGGGAGAGGGATAGGTGA
GCTAGTCTAATCCGTGTCTCATTACCTGCCATCTTGGTCTTGCCCTGGCT
TCCTTTATCCGTATCCTCATGGAGACTCCTCTGCATATCTGACACCCTCT
CTATCCCTCTCCAGGCATGGCAGTTCCCGCCTTATTTCTCCTGCTCAGCT
AATAGATTGATCAGTTCTTTATTGATCAATCTGAAGGTGATATAGAACAA
TATTTTACCAAATACTGATTCTAGGACCGCTTCCTAATACTGACCATACC
CATATCTGCGATGTACCCTGTACTTCTCCTGCGGCACAATTCAAGTACTC
TGATACTTGTTGTATTAAGCACTTCCCTAGCACCCAGGTTAATGTTCCTC
TCCAAAGGTATTTAAAAATTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a01.g1 MSMg01no082_a01.g1 CHROMAT_FILE:
MSMg01no082_a01.g1 PHD_FILE: MSMg01no082_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:23 2005
         (243 letters)



>mm_chr15_83269247_83269889
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcatgcttttggaattaaggaatcattgtccaatgcagtggccacatgtaagttgagt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 cttcatgcttttggaattaaggaaccattgtccaatgcagtggccacatgtaagttgagt 384

                                                                       
Query: 61  gctggtctagagtgcttcagccttttggtttagttgagggttttaactttccctaggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctggtctagagtgcttcagccttttggtttagttgagggttttaactttccctaggtat 324

                                                                       
Query: 121 aaaagtaattcaggaggcttttctattgccccctttatcttccaaataagtaacatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaagtaattcaggaggcttttctattgccccctttatcttccaaataagtaacatggag 264

                                                                       
Query: 181 acctggtatttcttactaaaagcttcaggctctaaagggagagggataggtgagctagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acctggtatttcttactaaaagcttcaggctctaaagggagagggataggtgagctagtc 204

              
Query: 241 taa 243
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)