BAC Information

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BAC

Clone NameMSMg01-082D10
Chromosome15 (Build37)
Map Location 5,641,415 - 5,641,704
singlet/doubletsinglet
Overlap genenone
Upstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082D10.T7 (MSMg01no082_d10.b1)MSMg01-082D10.TJ (MSMg01no082_d10.g1)
ACCAG302635AG302636
length698692
length of high quality
(start - end)
290 (69 - 358)307 (70 - 376)
definitionCHROMAT_FILE: MSMg01no082_d10.b1 PHD_FILE: MSMg01no082_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:38 2005CHROMAT_FILE: MSMg01no082_d10.g1 PHD_FILE: MSMg01no082_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTCATTCCCTAGATCATGAAGGTTAGGTCCAAAGTGCCCTACCCA
CCCCCACCCCCAGTGGCAGTGCTGGTGACATTGTCCTAAGTGGAAGATCT
TTGGTCAAGGAAACAGAAGGATTGGTATCAGATAAACAGGCTTTAATGTG
GGTTTCTATTTACTAGAAAAGTAGATCTCCCTAGGTGAGTTCCCGTTTGG
CAGGAACTTCCCCTCAATCCTATAGGGATCTCCCTTAACCTTTCCCCAGA
GGTCAAGTACCAACCTCCAGGTCAATCTGAACATCCGATGTGAGTTCAGA
TCCCTGCCCCATCATACAAAATCTGCTTGCTTTTCCACCATTTTGTCCTT
CTTGTCCCACTTCCCCAGATATGGTCCTGTCTGCTTGATTCCCAGTAAAT
CTTTATTTCTACCCGCTGAGCATTCTAGCTTCAGCAGTTTCTCTGCCTCA
CCTCTGTAAATGATCATTCTCTATTATGAACTTATATGATACATTTGTGC
CTTCTCTGTTGTCAGCAAATCATAGCTTATATCTTTTTTTTCTCCCTGCC
CGTGCATGCATGAACGGAAAATCTTCCTGTTGGTACGATCCTTGGGGATA
ATCACAGGCTACTGGGTTTCCTGAATATCTCTGCCTTTGCTGAGGCCT
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGACTGCAGAGCAACTTCTACTACCATGAG
CGTTATTGTAGAAGGGTGAAGGCTCTAGGTAGGCACCATCTCAATTTCTC
CATATTCAATGAGTTGTATAGGTGTTGTCTTCTGCAATCAAGTCTTAATA
TCAGTTTGTGGATAGCAACTAGTAACAGAAGGAAGGTAAATGCCAATCCT
GATACAGTCTCTTCCTCTTATAATGGTAACTTGCCCACAAGATATGCTGC
TGCATGGATGGCTCTTATCTCCTGGGAGTAACCAATCAAGATCCGGTTTA
ATGTAAGTCTTGTTCCATGTGATGGACTCCATACCCAGTACTTCTTGTAT
GGTAAAAACCTGAGACTAGACGGTTCAGAAGACCTAGGAGAAAAAGAAGT
ACTATTGTTCAGCTGAAGGAATGTAGCAATCAAATGACTCCTCATGTCAC
TCAGCTATATTCACAGATCAGTGCCGTGCTCAGTCCTCATTAGTGGTGCT
TCCTCCTGCAGCATATAGAAATAATGACAAATGCCCTCATCCAGACTGTA
TGCTGAGATCAAGATACCTTTCAACGGTCCCCTTAGATAGGATGTCTTCC
TTCAATCTCCCCCCTCCCCCATCAGATGCTAAAAAATCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_d10.b1 MSMg01no082_d10.b1 CHROMAT_FILE:
MSMg01no082_d10.b1 PHD_FILE: MSMg01no082_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:38 2005
         (290 letters)



>mm_chr15_5641215_5641904
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaaggttaggtccaaagtgccctacccacccccacccccagtggcagtgctggtga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tcatgaaggttaggtccaaagtgccctacccacctccacccccagtggcagtgctggtga 260

                                                                       
Query: 61  cattgtcctaagtggaagatctttggtcaaggaaacagaaggattggtatcagataaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgtcctaagtggaagatctttggtcaaggaaacagaaggattggtatcagataaaca 320

                                                                       
Query: 121 ggctttaatgtgggtttctatttactagaaaagtagatctccctaggtgagttcccgttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggctttaatgtgggtttctatttactagaaaagtagatctccctaggtgagttcccattt 380

                                                                       
Query: 181 ggcaggaacttcccctcaatcctatagggatctcccttaacctttccccagaggtcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaggaacttcccctcaatcctatagggatctcccttaacctttccccagaggtcaagt 440

                                                             
Query: 241 accaacctccaggtcaatctgaacatccgatgtgagttcagatccctgcc 290
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 accaacctccaggtcaatctgaacatccaatgtgagttcagatccctgcc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)