BAC Information

Click to search

BAC

Clone NameMSMg01-082O10
Chromosome15 (Build37)
Map Location 51,593,247 - 51,593,883
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644, LOC100039662
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O10.T7 (MSMg01no082_o10.b1)MSMg01-082O10.TJ (MSMg01no082_o10.g1)
ACCAG303160AG303161
length697706
length of high quality
(start - end)
49 (247 - 295)638 (69 - 706)
definitionCHROMAT_FILE: MSMg01no082_o10.b1 PHD_FILE: MSMg01no082_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:29 2005CHROMAT_FILE: MSMg01no082_o10.g1 PHD_FILE: MSMg01no082_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTGCGGCCGCAAACGANCACAATCNGCACCGCCCGCGGAANCAAGGC
GTACTGGGAGGGGACGNNACNNAAGCAGGGGGACGGACAGGCGCAGNACN
NCCCATTGCCCCCCAGAAGCNGAAANAAANGGGAACCAGCNNCNNNANNC
CCACAGGAGACAAAGCNAAGAGGAAAAAGNCAGGGAGGGAANNANNGGCN
CNCCCNCCCCGCCGCCGCCCCCCAGCCCGGGCGGCAGGGCGTTTTATTCT
AATTTGCATATGAGACTGGGAGTTCCTGGAAGCTCACTCCCCTGGGGCTT
CNAGACTTTTTTTTTTCCCNCCACCAGCGACNGCAGGCGGCCNANNNAAC
GGCCACCGCCCACNGAGCANAGGAAAGGCGGCAAAANNCGNNAAACCGCC
NCGAAAACCGGGCAACAANACGGCCCNAAAACAGCGACACCCCCCNCCAG
AACCNNCAGNAGNCACGGAAAAACACACGGGAAACCGCANCCACCGAGAG
NGGAGCCAGAAAAGCAAAGAGCCAGCGGGNCCAACCAANACANNNNCNCC
CCNCAAACNCCAGAAGGGCGCCACCCCGCCACACCCAGCNACCCAAGACC
GCNNCCAAGNAGCGACAGCAACGGGNGAAAGAGGACACCCNCGCAACTTT
TTTCTTCANACACTCCTGGTAAGGTGGCCCTCCCCCAGTAGATCATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGCACAAGCACATAGAAGATTGGCTTAGTT
GTTGTCTGAGTCATAATAAGGCTATTAAAGCTGCAGAAAATGCAACACAA
AGCATTTCTTAAAAAGCAGCAACTCTTCATTTCTAAATGACCAAGGAAAA
ATTCCAGGCTGACTGTTCATAAAGTTAAAATGGGGGAAAAATTAGGATGG
CAATAAATCTTCCATGAGATCACACTATAAATCTAGGGAGAAACCCTTTC
GGGTGACACAAGGCATAACCTTTAACAGCTAATAGTCTTGAAACTGTTTG
TGTCTGACCGTGCTGAGTCCCTAAGTGGACTCCATTCCAACATTGTCATT
TATCTTGTGACATTTACTTTATTGTGGTAGGTTCCAGTGGTTTCTTTCTC
TCTTTTTTTTTCTCAGTGAGTCTGTGATAAAATAAACTCACCAGAGTAAG
ATGAATGCTGTCTTATTAACAAGCTTCACTTAGAAGGGAATGGGGCTGAG
TTGGCCCAGCATGAATCAGGGGGGTTTGCATTTTTTCATTGGGTATACCA
GATGGCTATCTCCTGCTTGTATTCCCGTGTTTCTACAGCCAATGTAATAG
AATATTTCTGAATTCTGAAAAATTCGTAAGCAAAACAGTAGAAGGACAAC
AAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o10.g1 MSMg01no082_o10.g1 CHROMAT_FILE:
MSMg01no082_o10.g1 PHD_FILE: MSMg01no082_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:29 2005
         (638 letters)



>mm_chr15_51593047_51594084
          Length = 1038

 Score = 1208 bits (625), Expect = 0.0
 Identities = 634/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgcacaagcacatagaagattggcttagttgttgtctgagtcataataaggctattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 actgcacaagcacatagaagattggcttagttgttgtctgagtcataataaggctattaa 778

                                                                       
Query: 61  agctgcagaaaatgcaacacaaagcatttcttaaaaagcagcaactcttcatttctaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agctgcagaaaatgcaacacaaagcatttcttaaaaagcagcaactcttcatttctaaat 718

                                                                       
Query: 121 gaccaaggaaaaattccaggctgactgttcataaagttaaaatgggggaaaaattaggat 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 717 gaccaaggaaaaattccaggctgactgttcataaagttagaatgggggaaaaattaggat 658

                                                                       
Query: 181 ggcaataaatcttccatgagatcacactataaatctagggagaaaccctttcgggtgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggcaataaatcttccatgagatcacactataaatctagggagaaaccctttcgggtgaca 598

                                                                       
Query: 241 caaggcataacctttaacagctaatagtcttgaaactgtttgtgtctgaccgtgctgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 caaggcataacctttaacagctaatagtcttgaaactgtttgtgtctgaccgtgctgagt 538

                                                                       
Query: 301 ccctaagtggactccattccaacattgtcatttatcttgtgacatttactttattgtggt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 537 ccctaagtggactccattccaacattgtcatttatcttgtgatatttactttattgtggt 478

                                                                       
Query: 361 aggttccagtggtttctttctctctttttttttctcagtgagtctgtgataaaataaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggttccagtggtttctttctctctttttttttctcagtgagtctgtgataaaataaact 418

                                                                       
Query: 421 caccagagtaagatgaatgctgtcttattaacaagcttcacttagaagggaatggggctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caccagagtaagatgaatgctgtcttattaacaagcttcacttagaagggaatggggctg 358

                                                                       
Query: 481 agttggcccagcatgaatcaggggggtttgcattttttcattgggtataccagatggcta 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agttggcccagcatgagtcaggggggtttgcattttttcattgggtataccagatggcta 298

                                                                       
Query: 541 tctcctgcttgtattcccgtgtttctacagccaatgtaatagaatatttctgaattctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tctcctgcttgtattcccgtgtttctacagccaatgtaatagaatatttctgaattctga 238

                                                
Query: 601 aaaattcgtaagcaaaacagtagaaggacaacaaaag 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaaattcgtaagcaaaacagtagaaggacaacaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)