BAC Information

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BAC

Clone NameMSMg01-083K09
Chromosome15 (Build37)
Map Location 68,566,565 - 68,566,904
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945
Downstream geneEG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K09.T7 (MSMg01no083_k09.b1)MSMg01-083K09.TJ (MSMg01no083_k09.g1)
ACCAG303710AG303711
length722705
length of high quality
(start - end)
149 (66 - 214)340 (73 - 412)
definitionCHROMAT_FILE: MSMg01no083_k09.b1 PHD_FILE: MSMg01no083_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005CHROMAT_FILE: MSMg01no083_k09.g1 PHD_FILE: MSMg01no083_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAGCATACCCAATCAGGTGAAGGGCATAGACTATAGAACCAAAGAGA
ATCAAACTGAATACCTACCCTAGTATAGTAATTTCATTTGTAAAATAGAA
ATTATGAGCCCTTCCTGGCTAACTTGTTATAAAGATTAAATAAGATAGTA
ATAGACAGAGCTNNTACCAGNTNNCTTTTGCAACTCTCGCCCTCCCTTTG
TTACCAAATTTNTAAAANNATATATTAAAACTTTTTTGGGGGGGGGGCTC
GCGCTTTCCCTCTCCTTATTATCCCTTCCCTTTCACATCTATTTTTTATT
TACCTCATCTTTCTTTATCTCTCTTCATCTCTCACACCTATCACTTGCTC
TCCTCTGCTATCTTTTTTTTTTCCATTTTTACTCATTCTTCATTTTAATA
ATCTTTATAATTTTATTTTTCTCTCCTATCATTTTCTTTATCTTTCTTTT
ATATCTAACCGAATTAACATCTCCTGCATACATTTTCCTACACATGTATA
CCATTACATTATCTGCCCAACAATCTATTTCGCGTATTACGCTCCGTTTC
TCCTCTAAATTTTTAGTTACTCATATCCCCACATATTTTTCATTCTCTTT
ATTGTTTTACGAATATCATTATTATAACTCCTGCCTATTTCTCCCGATTT
GCCACTCTCGACATGTCACTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCATCTTCTTACGGCCATCAAGTACA
TCAGCTCTTGTACATCTCTCAGGCTCCTCTTGCTTCAACAGGACCTCAGC
AGGATGTACTTTCTCCCTTCAGCCTCCACAGGACAAGGCTTTCTGTGGTC
TGGGTCACCAGTGACTATTACCCTCAGCCCAGTTCTGTGAGTGCTGCCTT
GTGAGATCTGAGTGGCAAGATCATCTTGAGGGTGCGCTCTGGGGAAAGAG
GGAGAGTCTAGAAGAGCACACAGCAGGACTGGCTTCTTAGAAATGTGTAG
GGAGAAAGGAAGGAAGGGACAGTACTAGAAGGCATGAATAGAGAAATTGG
TGTGAGGATGGTATATGTCTCTTGTCCCTGAGCTCTAGTGGTAGTGACAT
CCAGTCATGGACCCTGTGATTATATATGAGCTCGTTTGAACTAAGGCCAG
TCAATATTACGTATTTTGTATAAGTGTTAGACCATACCTATGCATGAACT
CTTTTATCCCCCTTACTCCTTCGTGTCTTTCTTTCTTTCTTTTTTCTTTT
TCTCGCTCACCTTTATTCTATTTTTTTTCGTGTTCGAACTACTTTGTCTA
TTGTTTACCTAGATCTTTTTTTCCTTCGTCTTAATTTACTCCTACATATA
TTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k09.g1 MSMg01no083_k09.g1 CHROMAT_FILE:
MSMg01no083_k09.g1 PHD_FILE: MSMg01no083_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:26 2005
         (340 letters)



>mm_chr15_68566365_68567104
          Length = 740

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatcttcttacggccatcaagtacatcagctcttgtacatctctcaggctcctcttg 60
           |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 actcatctactgacggccatcaagtatatcagctcttgtacatctctcaggctcctcttg 260

                                                                       
Query: 61  cttcaacaggacctcagcaggatgtactttctcccttcagcctccacaggacaaggcttt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaacaggacctcagcaggatgtgctttctcccttcagcctccacaggacaaggcttt 320

                                                                       
Query: 121 ctgtggtctgggtcaccagtgactattaccctcagcccagttctgtgagtgctgccttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggtctgggtcaccagtgactattaccctcagcccagttctgtgagtgctgccttgt 380

                                                                       
Query: 181 gagatctgagtggcaagatcatcttgagggtgcgctctggggaaagagggagagtctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatctgagtggcaagatcatcttgagggtgcgctctggggaaagagggagagtctaga 440

                                                                       
Query: 241 agagcacacagcaggactggcttcttagaaatgtgtagggagaaaggaaggaagggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcacacagcaggactggcttcttagaaatgtgtagggagaaaggaaggaagggacag 500

                                                   
Query: 301 tactagaaggcatgaatagagaaattggtgtgaggatggt 340
           ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 501 tactagaaggcatgagtagagaaattggtgtggggatggt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)