BAC Information

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BAC

Clone NameMSMg01-084I17
Chromosome15 (Build37)
Map Location 47,725,805 - 47,726,090
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream geneEG665146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084I17.T7 (MSMg01no084_i17.b1)MSMg01-084I17.TJ (MSMg01no084_i17.g1)
ACCAG304366AG304367
length727755
length of high quality
(start - end)
289 (43 - 331)104 (143 - 246)
definitionCHROMAT_FILE: MSMg01no084_i17.b1 PHD_FILE: MSMg01no084_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:36 2005CHROMAT_FILE: MSMg01no084_i17.g1 PHD_FILE: MSMg01no084_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTATTGTATGCCTTTTATTTTCCAATACAATTTTTTACATTTCAAAT
TTTGTTTTTAATTTAAAATTTATTTTTCATGGATTAGGGTTATATTACTA
TATATGTGCATGTGTGCCAAACCGTCACTATATTACTGAGCTACTAATGG
ACTTATAGTATAGTTTATATTTATTTAAGAAGATTGTGACATTTTTATCC
CAATTAATCAAAAGGACATATTTCAAATACATACACACAAGCTGTGATGA
TTTTAATTATAGATATTATACTATATGGTAAAGAGTATAAAGACAATACG
CTAAGAATTTTGAAGAATAATATTAAATTCCATTTTAACGGTAAATAATC
TTATACTAATCATATATATTCATCTGTAATTAAACTATATATGGCATAGA
CTATGACTACTAATTTAGCATGACATCCTACATAGGTTTTCTCTTACTAT
TTCAAGTCTCTTGAAGACAATTTTTTAAACTTAATCTAGAGATATGATTA
AGTATCATACTTTGTCCCTTCATTTTCCATTTTTCATTACTTTTAGGTTT
TATTTTATTTTATTTTTTGATGATGGATAAAACTCTAACTTAATCCCCTC
GCCCCTAATATATCAATCTTTGACCCGAATTTTCATATCTTCAATTGTCA
TACCGGATAGTTTATTGTCCTGCTTAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATCATCTCAGTACTTACGATGCAAAGACA
GAGAAATTGTGGTGAGTTGGGTAACCTGGGCCCCATAATGAGTACTGTAT
TAAGAACTTGTCTCTGTCTCACTCTCTCACTAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGGATGGATG
CCTCTTTTTTGTATGACCTTTTATTTTATATCCCTTTTTTTTTTTTTTTT
ATTTTTTTCTTTTTATTTTATTTTTTTTTTTTTATTCTTTCTTTCATTAT
CTTCTTGTTTCCCTTCCTCCGCCCCCTCTCNTTTTTTTATCTTTTTTTTT
TTTCTCCTCCTTTCTTTTTCCTCATCATTTTCCTTTTTTTTTGTCTATTT
TTTCATTTTTGTCTCTATTTTCTTATCCTTTTTTTGCCGTCCGCGTCCCT
CATCTTCTGTCATTTTTTGTCTACTTTCCTTATGATCATTATTTATTTCT
TTATGAGTGTTTTAATTTTTTTTTACATTACAGATAAATATATTTATATT
CTTAATTATAATTTTTATATCCCACTTCCCACTATATTATCAGTAATTAT
TCTTTTATTTTCTTATTTTACTCTCTTTATATCTATTCTTTACTTTCTTT
ACCTCATATTTTTTATACTTACATTTTTATTTAAATTTATTATTTATCTA
ACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_i17.b1 MSMg01no084_i17.b1 CHROMAT_FILE:
MSMg01no084_i17.b1 PHD_FILE: MSMg01no084_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:36 2005
         (289 letters)



>mm_chr15_47725602_47726290
          Length = 689

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattgtatgccttttattttcc-aatacaattttttacatttcaaattttgt 63
           |||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||
Sbjct: 204 gaattctttattgtatgtattttcttttccaaatacaattttttacatttcaaattttgt 263

                                                                       
Query: 64  ttttaatttaaaatttatttttcatggattagggttatattactatatatgtgcatgtgt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ttttaatttaaaatttatttttcatggattagggttatattaatatatatgtgcatgtgt 323

                                                                       
Query: 124 gccaaaccgtcactatattactgagctactaatggacttatagtatagtttatatttatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccaaaccgtcactatattactgagctactaatggacttatagtatagtttatatttatt 383

                                                                       
Query: 184 taagaagattgtgacatttttatcccaattaatcaaaaggacatatttcaaatacataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taagaagattgtgacatttttatcccaattaatcaaaaggacatatttcaaatacataca 443

                                                         
Query: 244 cacaagctgtgatgattttaattatagatattatactatatggtaa 289
           ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 cacaagctgtgatgattttaattatagatattatactatatagtaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)