BAC Information

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BAC

Clone NameMSMg01-086E04
Chromosome15 (Build37)
Map Location 39,038,978 - 39,039,436
singlet/doubletsinglet
Overlap geneRims2
Upstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086E04.T7 (MSMg01no086_e04.b1)MSMg01-086E04.TJ (MSMg01no086_e04.g1)
ACCAG305622AG305623
length665678
length of high quality
(start - end)
278 (348 - 625)468 (55 - 522)
definitionCHROMAT_FILE: MSMg01no086_e04.b1 PHD_FILE: MSMg01no086_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:56 2005CHROMAT_FILE: MSMg01no086_e04.g1 PHD_FILE: MSMg01no086_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAATAAATTCCGAGGTGCGCGGAATTCTTTGTTCATTCAAGACAACATC
TTTTAAGGGGGCTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTA
TATATATTGGATATTAGTCCCCTATCTGATTTAAGATAGGTAAAGATCCT
TTCCCAATCTGTTGGTAGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCT
TGCAGAAACTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTT
AAAGCACAAGCCAATGCTATTCTATTCAGGAATTTTTTCCTTGAGCTANA
TCTTCGAGACTTTCCCCCACTTTCTCCTCTATAAGTTTCAGCGTCTCTGG
TTTTATGTGAAGTTCCTTGATCCCCTTAGATTTGACCTTAGTACAAGGAG
AGAGGAATGGGTCGATTCGCATTCTTAGACATGATAACAACCAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGC
TCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGT
CTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCAT
GCAATTTTTATCACAATTGCTCTGTATTATAGCTTTAGGTCGGTCATGGT
GATTCCACCAGAGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTGTGAGAAAGATGATGAACTACAATGGAACTATTGTTTAGTAAG
TGTTCAGGAGCTGCTGTGCACTGTGTCTCATGAATATATGCAGATGAAGA
AGCTGAACCGAACCAGTCCTAGGCAGATGACTTCTCTTGTGTCCCAAAGG
ATGAGTAGATCCCGGCAAGTGGAGATATTCTAAGCAAAACCCCCCAGACT
CTCAGGTCTCCCTAATCCAAAGACTTCTTGAGTTGTAGAAGATGGGCAGC
ATATAGGGCTTTAAATGGAGATGAGTTATTAGAGGACACTGGAGAGATGC
CAAGAGCCAGATCTTAAAACACCTTGTATGGTAGATATTCTTTGGATCTG
AGTGCCATCAGAAATGGTAGCAGGAATGGATTTTAACCAGTGGTATGTAT
ACTTTTGTTGGAAAACACTCTTACCACGATTATTACTGAAAGAGTGTAGA
ATTAGGGCACTAGTTAGCAGACTCTAATTCAGGTGATAAATGATGGAAAC
ATAAAATTACATAGTAGAGGGTCAAGGTAAATTTTTGAAAAAGTTATAAG
CCAAAATTTCTAGGATTTGATAACTGCCAGATTAACCTCTTTAAGGCACC
TTACCTCTCTATCTTACTTCTACTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_e04.g1 MSMg01no086_e04.g1 CHROMAT_FILE:
MSMg01no086_e04.g1 PHD_FILE: MSMg01no086_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:56 2005
         (468 letters)



>mm_chr15_39038778_39039636
          Length = 859

 Score =  839 bits (434), Expect = 0.0
 Identities = 456/468 (97%), Gaps = 9/468 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgagaaagatgatgaactacaatggaactattgtttagtaagtgttcaggagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgagaaagatgatgaactacaatggaactattgtttagtaagtgttcaggagctgc 260

                                                                       
Query: 61  tgtgcactgtgtctcatgaatatatgcagatgaagaagctgaaccgaaccagtcctaggc 120
           |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||
Sbjct: 261 tgtgcactgtgtctcatgaatatatgcagatgaagaagctgaacc-----agtcctaggc 315

                                                                       
Query: 121 agatgacttctcttgtgtcccaaaggatgagtagatcccggcaagtggagatattctaag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 316 agatgacttctcttgtgtcccaaaggatgagtagatcccagcaagtggagatattctaag 375

                                                                       
Query: 181 caaaaccccccagactctcaggtctccctaatccaaagacttcttgagttgtagaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caaaaccccccagactctcaggtctccctaatccaaagacttcttgagttgtagaagatg 435

                                                                       
Query: 241 ggcagcatatagggctttaaatggagatgagttattagaggacactggagagatgccaag 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtggcatatagggctttaaatggagatgagttattagaggacactggagagatgccaag 495

                                                                       
Query: 301 agccagatcttaaaacaccttgtatggtagatattctttggatctgagtgccatcagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agccagatcttaaaacaccttgtatggtagatattctttggatctgagtgccatcagaaa 555

                                                                       
Query: 361 tggtagcaggaatggattttaaccagtggtatgtatacttttgttggaaaacactcttac 420
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 556 tggtagcaggaatggattttaaccagtggtat----acttttgttggaaaacactcttac 611

                                                           
Query: 421 cacgattattactgaaagagtgtagaattagggcactagttagcagac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacgattattactgaaagagtgtagaattagggcactagttagcagac 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 859
Length adjustment: 10
Effective length of query: 458
Effective length of database: 849
Effective search space:   388842
Effective search space used:   388842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)