BAC Information

Click to search

BAC

Clone NameMSMg01-087O14
Chromosome15 (Build37)
Map Location 91,031,841 - 91,032,382
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2
Downstream geneLOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087O14.T7 (MSMg01no087_o14.b1)MSMg01-087O14.TJ (MSMg01no087_o14.g1)
ACCAG306807AG306808
length702700
length of high quality
(start - end)
545 (45 - 589)484 (68 - 551)
definitionCHROMAT_FILE: MSMg01no087_o14.b1 PHD_FILE: MSMg01no087_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:12 2005CHROMAT_FILE: MSMg01no087_o14.g1 PHD_FILE: MSMg01no087_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTACTGACTTTGCTAGAATATAGTTGATAGTGACTGTAATGTAA
TGTATTCAAATTTGATTTTTACAAAGTGAATATTAATGGATTGTAACTTC
AGCTCCAGGGGATACAACACCGTATTGTGGATTCTACAGACAACTGCTCT
CATGTGCACATATACATAATCTAAAATAATATATATTAAATATTGCATGG
AAATTTTAAAGACATAAACACTGTAGGTGTTCCTGTCAAGTCATGAACTT
CTTGGTGATTTTAAGATTAATGTTTTAGTTGCTGCTGGAAGTTGCAAAAG
CAGTGTCCTAGAGGAAACACAGCCTAAGATTGCTTTTCTCAACATGAAGT
ACTGCTATACCTCACGCATCAGCTACCAGGGGCCTAAACCACAGAATAAA
GAAATGTGGTTACAGTATCTTAGGACTTTAGTTTTGATCAGAGATCAGAA
AGAGGAGAGCCTTGCTTTAGATGTAAGCTGGCATCTATACACTATAGAGT
AACTCTAAGACAGGTGAGATGCTGGGATGCCCCAGGGCTGCAGGATGATT
CAGTGAGGAAAGGTGAATGTGTTCACGCCGTATGACCAGAGTTTATCCTT
GCACTCCATACAGAGTAAGGAGAGAACCGACTGCTGAAGTTGTCCCTTTG
AC
AATGCAGTGGGAGGCCTGGTGGCCGCCTGTTCGACAAATTTAGGTGAACT
ATAGAAGTATCAGCGAAATTCTCTTGTATTTGTCATTAAAAAGAGAATGG
TCCCCCTTCTAAGTGGGTTTTCACACTTGGGCCTTGCTTCTTGTTAAGCT
TCCTATGGTCTTAGAGTTGTATCATGGGTATTCCAAGCTTTTTGACTAAT
ATCCACTTAGCAGTGAGTACATACCATGCATGGACTTTTGGATCTGGGTT
ACCTCACTCAGGATGATAGTTTCAAGTCCCATCCATTTGCCTGCAAAATT
CATGATGTCCTCAGTTTTATTATCCTGAATAGTATTTTATTGTGTAAGTG
AAGCACATTTTCTGTATCCATTCCTTGGTTGAGGGACATCTGGGCTCTTT
CCAGCTTCTACCCATTACAAATAAGGCTGCTCTGAACTTAGTGGAGCAAG
TATCCTAGTGGTATAGTGGAGCATCTTTTGGGTATATTCCCAGGGGTGGT
ATAGCTGGATCTTAAGGTAGAGCTATTTCCAATTTTCTGATGAACAGTCA
GACTGATTTCCAGAGTGGTTGTACCAGTTTCGAATCCCATCAGCAATGCA
AGAGTGTTCCTCTTCCTCCACATCCTTGCCGGTGTTACTGTTGCTCGAGC
TTTTTATCCTAACCATTCTGATTGGTGCCTGGTGGAACACCAGCCCTGAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_o14.b1 MSMg01no087_o14.b1 CHROMAT_FILE:
MSMg01no087_o14.b1 PHD_FILE: MSMg01no087_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:12 2005
         (545 letters)



>mm_chr15_91031638_91032582
          Length = 945

 Score =  963 bits (498), Expect = 0.0
 Identities = 531/542 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttactgactttgctagaatatagttgatagtgactgtaatgtaatgtattc 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttacagactttgctagaatatagttgatagtgactgtaatgtaatgtattc 263

                                                                       
Query: 64  aaatttgatttttacaaagtgaatattaatggattgtaacttcagctccaggggatacaa 123
           |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 aaatttgacttttaaaaagtgaatattaatggattgtaactccagctccaggggatacaa 323

                                                                       
Query: 124 caccgtattgtggattctacagacaactgctctcatgtgcacatatacataatctaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caccgtattgtggattctacagacaactgctctcatgtgcacatatacataatctaaaat 383

                                                                       
Query: 184 aatatatattaaatattgcatggaaattttaaagacataaacactgtaggtgttcctgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatatatattaaatattgcatggaaattttaaagacataaacactgtaggtgttcctgtc 443

                                                                       
Query: 244 aagtcatgaacttcttggtgattttaagattaatgttttagttgctgctggaagttgcaa 303
           || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatcatgaacttcttggtgattttgagattaatgttttagttgctgctggaagttgcaa 503

                                                                       
Query: 304 aagcagtgtcctagaggaaacacagcctaagattgcttttctcaacatgaagtactgcta 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagcagtgtcctagaagaaacacagcctaagattgcttttctcaacatgaagtactgcta 563

                                                                       
Query: 364 tacctcacgcatcagctaccaggggcctaaaccacagaataaagaaatgtggttacagta 423
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacctcgggcatcagctaccaggggcctaaaccacagaataaagaaatgtggttacagta 623

                                                                       
Query: 424 tcttaggactttagttttgatcagagatcagaaagaggagagccttgctttagatgtaag 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 tcttaggactttagttttgatcagagatcagaaagaggaaagccttgctttagatgtaag 683

                                                                       
Query: 484 ctggcatctatacactatagagtaactctaagacaggtgagatgctgggatgccccaggg 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 ctggcatctatacactatagagtaactctaagacaggtgagacgctgggatgccccaggg 743

             
Query: 544 ct 545
           ||
Sbjct: 744 ct 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)