BAC Information

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BAC

Clone NameMSMg01-089L08
Chromosome15 (Build37)
Map Location 25,864,489 - 25,864,772
singlet/doubletsinglet
Overlap gene1810015C04Rik
Upstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1
Downstream geneZfp622, AK162044, Fbxl7, LOC622531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L08.T7 (MSMg01no089_l08.b1)MSMg01-089L08.TJ (MSMg01no089_l08.g1)
ACCAG308135AG308136
length659709
length of high quality
(start - end)
299 (36 - 334)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no089_l08.b1 PHD_FILE: MSMg01no089_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:36 2005CHROMAT_FILE: MSMg01no089_l08.g1 PHD_FILE: MSMg01no089_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCATGGAATTTGCAGAAGAAAAAAGAAACAATTTGA
TGAACTTAAAGAAAACAAGCACATGGATGATACCCAAGAAAGCACAAAGA
TAAAGCCGAATGAAATGATGAAGACAGTCGAATTTGAGAACATATGCAAT
AAAGATACAGAAATGTTGAAAGAAACTCAATCTGAAATGAAAATGGAACT
GGAAAACTCAATAACCCAGTTAGCAAACTCAACAGAAAGCCCAATGTGTA
GAATTGATCAAGTAGCAGATAGAATGTCAGGACTCAAAAATAGAGTCGAC
TAGACAAAACAACCAAAAAATATTTAAAAAATATATTTTAACAGGGTAAG
AAAGGAACATATTGTAAATATAAAACATCACAAAAAGGCCAAACCTTCTG
ATCATAGGCATAGATAAGGAAGAAAAATCTCTAAGTCAATGAAATAAGCC
AGATCTTCAACAAGATCATAGAAAAAAAACTTTTTCAAATTAATGAAAGA
CAGACTCATACTAATACAAGAGGTATACAGAACGCCAAATAGACAAGACA
ATTCTTGTGTCATATCACAGATAAAGCATGAAATATTGCAAAAATAAAGG
AAAGAGATTTCAAAGCTGCTAGACAAAACCAACCAACCAACCAAAAGCCC
CATTTTTAA
ACATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGACACCTCCGAGGTGGGGATATTT
GGAGAAAATAGACAGGATGGGGGCGACAAAGCTCAGAGGTGGGCACAGTT
ACTGTGTTGGTTTTTACAGAGTTGCTATTTTTGGCTGAAAAGAAGGTTTT
GAGGAAAATCCTCCTGTGCGATGCTTCCAGAAAAGATAAAGTCACATTGG
GTGGAGTCTGTTGTAGGCAAGAGAATTCTGTATTAGCCCCAGGGGACCAT
GAGCAGGAAGAGAAGGACCACGCTTACCCTGAGTCAGGACACTGAGGGCG
GACATGGCCTATTTTCTGCTCCCGCACCCCACCCTATTGGTGTCTTCTGA
TTTCTCTACTTTGTCCCTTCTGAATAACAACAATTCTAGAATGTTGTTGA
TACAGTTGCTAATGCAGTCTTTAGCCCTGCAACTCTATGTTTTATCTCTA
TTTTCATTTTATTTTATGCCTGCCTTCCCCTGCTTCCATTTCCCCTTATC
TCATTTTTTACTTCTCTAATTTTCTCCATTCACCACGATTCCTGTTGCTA
TCTTTTATTCTTCCTCCCCCCCCCTTCCTTTCTTGCCTCTCTCCCCTCTC
TCCCCTTATTCTTTTTTCTCCTTACCATTTTTTATCTCCCCTCCCTTTTT
CTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l08.g1 MSMg01no089_l08.g1 CHROMAT_FILE:
MSMg01no089_l08.g1 PHD_FILE: MSMg01no089_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:36 2005
         (284 letters)



>mm_chr15_25864289_25864972
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacacctccgaggtggggatatttggagaaaatagacaggatgggggcgacaaagctc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacatctccgaggtggggatatttggagaaaatagacaggatgggggcgacaaagctc 260

                                                                       
Query: 61  agaggtgggcacagttactgtgttggtttttacagagttgctatttttggctgaaaagaa 120
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagataggcacagttactgtgttggtttttacagagttgctatttttggctgaaaagaa 320

                                                                       
Query: 121 ggttttgaggaaaatcctcctgtgcgatgcttccagaaaagataaagtcacattgggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttgaggaaaatcctcctgtgcgatgcttccagaaaagataaagtcacattgggtgg 380

                                                                       
Query: 181 agtctgttgtaggcaagagaattctgtattagccccaggggaccatgagcaggaagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctgttgtaggcaagagaattctgtattagccccaggggaccatgagcaggaagagaa 440

                                                       
Query: 241 ggaccacgcttaccctgagtcaggacactgagggcggacatggc 284
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ggaccacgcttaccctgagtcaggacactgagggtggacatggc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)