BAC Information

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BAC

Clone NameMSMg01-090E08
Chromosome15 (Build37)
Map Location 42,305,578 - 42,305,899
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090E08.T7 (MSMg01no090_e08.b1)MSMg01-090E08.TJ (MSMg01no090_e08.g1)
ACCAG308547AG308548
length746781
length of high quality
(start - end)
327 (40 - 366)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no090_e08.b1 PHD_FILE: MSMg01no090_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:23 2005CHROMAT_FILE: MSMg01no090_e08.g1 PHD_FILE: MSMg01no090_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATGTAATAGCCAGCCACCTCATTACAATAGGGTTTTCCAGACTTTTCGTT
GTGTAAACTAAAAGTGTTCTCATTAGGAGTTTAAAGGAATATATATTTTT
TTTCTTTTCCCTAAGAGAACTCCTTTTTTTCCATCATGATTTTTACACAC
TTCTTTTATTTATTTACATCAGAAATGTTGTCCCGCTCTCCTGTGTGTCA
CATATGTAGCAGAAGTCTGCCACGCCTAATAGAATTCTTCCACAAGTATC
AGTATTCATTGATTCAGACTGATTTTCCTACACTTTTTAAGGCTGGTAAC
ACATTTTGTTTGAAATCTCTTACTATAATCATTTAACATGGCCTTGGAAA
TAGGACATGTTTATGAGTTCATTACAAGACTTTCAGAAACTGATTATTGA
GTTTAAAAGCTAATATGAAACTGGGAGGAGTCATGATTTGTCCTTTTCTA
ATTAGGGCTGGGGGATGGTTTCCTCTATTTCATAACCAGTCCTCTACTAT
TCCTTGATAAAGGTCAGCCAAAGTTCCATCCCTTTCTTTTAAGCGTGGTT
GGGGGGGGTTCCTTGGTTGACAAAATGTAAAAAATAGTTGATCTCATGGG
GGGTGGGAAAAATAGGGTCAGGCTACACCGAGTGTGTAACTAGCTTGGGC
AAAGGAACATATGGGTGGTTTAAAATGGTGTGAGACAAAATAACAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAATCCACAGTGGTATGATAAGGTACA
AGGCATTACTTCAATTCCCTTGTATCTGTTGAGGCTTGTTTTGCGACTGA
CTATATGGTCAATTTTGAAGAAGGATCCATGAGGTGCTAAGAAGCTACAT
TTTTTTGGGTGAATTATTCTATAGATGTTTGTTAGGTCCATTTGATTCAT
AATGTCTGTTAGTTTCATTATTTTTCTGTTTACTTTTTGTCTCAATATCC
TGTAAGTTAGTGAGTTTGTGGTATTGAAGCCCTCCACCAATACAATGTGG
TTTTTATGTTTCCCCCCCCCCCCCCCCCCTTGTTTCTTTGATTTTTAAAA
GAACATTGGTGGCTGGCAAAAAAAAAAAAAAAAAACCGGGGGGGGTGAAC
TAAATTGTCTCACCTTCTAATTCTTGTGAACCCGTCGTCTAATATATTCT
TTGCATCTGGATATGGGGTGGTGCCTTCTTCTTAACTTACAAAACATATA
ATACTATATCTTCTTAATCTTTCCTTGTTCCCTATTGTGTTTAATTATTG
ATATTTAATTTGAGTGTGGGAAATACGTACGATTGAAAATAACGGCGCTC
TCACTTGGGTCTTGATTCCTACTTTTGTGTTTTTTTAAATTTTTTGTATT
ATTATCCTCATAAATTCGCGTTCTTTCTGTTCTGTATCTCGGCCCCTCTG
CTCTCCCGTGTCGTTATCCCTATGTATCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_e08.b1 MSMg01no090_e08.b1 CHROMAT_FILE:
MSMg01no090_e08.b1 PHD_FILE: MSMg01no090_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:23 2005
         (327 letters)



>mm_chr15_42305375_42306099
          Length = 725

 Score =  555 bits (287), Expect = e-162
 Identities = 315/325 (96%), Gaps = 4/325 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgtaatagccagccacctcattacaatagggttttccagac-ttttcgttg 62
           |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct: 525 ggaattcaatgtaagagccagccacctcattataatagggttttccagacatttt-gttg 467

                                                                       
Query: 63  tgtaaactaaaagtgttctcattaggagtttaaaggaatatatattttttttcttttccc 122
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 466 tgtaaactaaaagtgttctcattaggagtttaaaggaatatata--ttttttcttttccc 409

                                                                       
Query: 123 taagagaactcctttttttccatcatgatttttacacacttcttttatttatttacatca 182
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taagagaactcttttttttccatcatgatttttacacacttcttttatttatttacatca 349

                                                                       
Query: 183 gaaatgttgtcccgctctcctgtgtgtcacatatgtagcagaagtctgccacgcctaata 242
           |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 348 gaaatgttgtcctgccctcctgtgtgtcacatatgtagcagaagtctgacacgcctaata 289

                                                                       
Query: 243 gaattcttccacaagtatcagtattcattgattcagactgattttcctacactttttaag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaattcttccacaagtatcagtattcattgattcagactgattttcctacactttttaag 229

                                    
Query: 303 gctggtaacacattttgtttgaaat 327
           |||||||||||||||||||||||||
Sbjct: 228 gctggtaacacattttgtttgaaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 725
Length adjustment: 9
Effective length of query: 318
Effective length of database: 716
Effective search space:   227688
Effective search space used:   227688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)