BAC Information

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BAC

Clone NameMSMg01-092C09
Chromosome15 (Build37)
Map Location 42,449,949 - 42,450,215
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092C09.T7 (MSMg01no092_c09.b1)MSMg01-092C09.TJ (MSMg01no092_c09.g1)
ACCAG309907AG309908
length806725
length of high quality
(start - end)
73 (99 - 171)267 (58 - 324)
definitionCHROMAT_FILE: MSMg01no092_c09.b1 PHD_FILE: MSMg01no092_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:54 2005CHROMAT_FILE: MSMg01no092_c09.g1 PHD_FILE: MSMg01no092_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTCCTTTTTTTCCTTCCTTTTCTCTTCCTTTCCCNTCTAACCNT
TTGTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCAATGTTCTTTCATCTTTAAAATGGCAGCAATAACATAAC
CTACATATTGGGGTGTTGTGATGATCCTAACTGATGAGGTTTTGCTGGAA
TATTGTGCAGCACAGTTGTTGATATACTTTAGGTACTCAGTAAACGTTAG
CTCTTGTTAAGCCAAGGCTAATTGGTTCATAACTGGTTCTTTAAATATTA
ACTTTCTTCCCCCTGTTTTGAACTGATGCGTTTTTATGGCTTTCTGAAGG
GGTTGAGCTAGGAATGTCAGTTCTCCAAAGGGACTGACACTCTTGAGAAG
AAACTTATTCACTATTTCCCTAACCCCCTCCCACATGCAAGTTCATGTAC
GATCGAATGCTTATCCTACATATCACATAACATACTATTCTTCCTATTTC
TCATGTGCAGGCTAATTACGATTGCATCTCGCCCTGCCATTCATCTTTCA
TCCCGACCTTTCAGTGGTTCCTTCTGTCGGTACCCCTTACCGACTATGCA
CCTGCTGCCCGTATTTTCCGCAATGTTCCCCCCGTATGATTCTTTCCCTA
ACTTTTTCTTTCTGCTCCCTGTCCTACCCAATTGCCTGACCCTGCCTCCG
TAATACCCGCTTGCCTTTTGCTGTATCCCTCCCCCTTCCGCCTACCTATC
CTCCTTCTTTGCTGCAACTCAACGCCTATTCCCCCTTTACAATTTCTCTC
TGATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATATATTCCTTCAACCATTCACAAATCTATATATATTCTTTA
TTATTCTCCGACGATGCTCCAGATGGCAGGTCGTACAAATACATAATTAA
CTGCAGAATAGTCCTCATCCTCCTGTGGACTCTTTCAGTTTAGTCAGTAC
AAATTGAAAAAGAGGTAATTGTGATGGAGAGAGGACCACAGAAGCATTTG
AGCTATATCAGCTTCATACCCAAATAGGTGTGGAAAGGGGATGTCACTCC
ACCATGTAGAACAGCATAGGCAAAGGTGTAGAACCAGGATTCCACAACAC
ATTTGGCAAATTTTGAGACCGGTGAGAAGTATAGCATATCTATAAGTCTG
GGCAGGAAGAGACAAGAAAAATAGTTGTGCTAACTATATGCTAGGGATTT
TGGACTCCATTACAAGAGCTACTAAAAGTCTGGCAACTTTTGTAAACATC
ACAGTTGTATGGTTGCAAACTGTGAGTGTCAGAATAGGGCTACAGTGCTC
AAGATAAGTGAAATAATTTATTGGCCTGCTCACACAATCCAAGGTAAACA
GCTTCAGCGACTACATATCATAGAGTATATTAGCTACCAAATACAATCTG
GCTAATCAAGTTGATTTATGCTTATCCCAATCTTTCCCGAAATGCTTAAC
TACCACTTAACCCAATTTATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_c09.g1 MSMg01no092_c09.g1 CHROMAT_FILE:
MSMg01no092_c09.g1 PHD_FILE: MSMg01no092_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:54 2005
         (267 letters)



>mm_chr15_42449749_42450415
          Length = 667

 Score =  501 bits (259), Expect = e-146
 Identities = 265/267 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatattccttcaaccattcacaaatctatatatattctttattattctccgacgatgc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catatattccttcaaccattcacaaatctatatatattctttattagtctccgacgatgc 260

                                                                       
Query: 61  tccagatggcaggtcgtacaaatacataattaactgcagaatagtcctcatcctcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagatggcaggtcgtacaaatacataattaactgcagaatagtcctcatcctcctgtg 320

                                                                       
Query: 121 gactctttcagtttagtcagtacaaattgaaaaagaggtaattgtgatggagagaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactctttcagtttagtcagtacaaattgaaaaagaggtaattgtgatggagagaggacc 380

                                                                       
Query: 181 acagaagcatttgagctatatcagcttcatacccaaataggtgtggaaaggggatgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaagcatttgagctatatcagcttcatacccaaataggtgtggaaaggggatgtcac 440

                                      
Query: 241 tccaccatgtagaacagcataggcaaa 267
           ||||||||| |||||||||||||||||
Sbjct: 441 tccaccatgaagaacagcataggcaaa 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)