BAC Information

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BAC

Clone NameMSMg01-092D15
Chromosome15 (Build37)
Map Location 102,820,963 - 102,821,162
singlet/doubletsinglet
Overlap geneHoxc8
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060
Downstream geneHoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092D15.T7 (MSMg01no092_d15.b1)MSMg01-092D15.TJ (MSMg01no092_d15.g1)
ACCAG309967AG309968
length713689
length of high quality
(start - end)
96 (137 - 232)201 (79 - 279)
definitionCHROMAT_FILE: MSMg01no092_d15.b1 PHD_FILE: MSMg01no092_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:01 2005CHROMAT_FILE: MSMg01no092_d15.g1 PHD_FILE: MSMg01no092_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAATAGTGTAGTGAGGCTAGGTGTGGGAATTGAGGGGAT
TAGCATGTACTGAGAATATGCTTGAACCCCGGCAGAGACCATGGTGCCCA
AGGCACCTATGCTCTGACTGTATCGGATTTTTACCCTCAATTCCTCCAAT
GTGACTTGTCAGAGACTGGTTATAGTTCCATGTCTGCTACGTTTGCCATA
TTATAAATACCCAGTCTGATGGCTTGAACAATGGACTTTATTTTTTCATA
ATTCTGGTCACTGTAGGTACTTGATGTTAATGTTATCTGCTCACGCCTTA
CTGACGCCTTTTTTTTTTTTTACCCCCCCCCCCCCGTATCTTTACATACT
TTTTTTCTTTTTTTTGCCATGTCCACTTACAAAAAAAGTCTTTCTTCTTT
CCTAGTAATCATACCACTTTTCTGTACTATTTGTCTTACCCTGTTTTATT
CCCTCTTAACCTATTCCTTATTGCTCCCTCCTCCTATTCAACGGTACTTT
CCTTCAAAAAACTACTGCCCTTTTCATTCTGATATTCACTGATTAATAAA
CCTCAGCTCAAATTAATCCATTGACCCTTTTATCATCCCCTCACCTACTT
AACCTTCCTACTAATCACACTACATTCCAACAACATACAATGCCCCCCCC
TTATTCTCCTCTT
TATACGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGCTGTTAGAGGAAAGAG
CTAAGTGAGAGCGCGCGCTCTACCTACCGACAGTGAGCAGAGAGCTGCAG
CCGCCCGAGCCCGCAGCCGGCACCGCGCCCCCACCTGCCCAGCCCCCAGC
CCAGCAGTCCAGCCCGGGGGAGCCGGCCAGCTTGGGGTTCGGTCCCGGGG
GGAGGGGAGTTTCGGGGATACCCGGCGGCGGAGCGCGATCCAAGGGGAGG
GGGCCGCGGCTTTTCATGTACCCAGCATGAGCTCCTACTTCGTCAACCCC
CTGTTTTCCAAATACAAAGGCGGCGAGTCCCTGGAACCGGCCTATTACGA
CTGCCGGTTCCCTCAGAGCGTGGGCAGATACCATGCGCTGGTGTACGGGT
CCCGGTGGCTCCGCGCCCGGTTTCCAGTATGTCTTGTACCACGTTCAAGA
CTTCTTCCATTCACGGTACTTTCGGCACCTCCTACTCGGGATATCATCAA
AACCCCCGCTTCTGAGAGCTGCCACGGCATACGCCTCCCAATCCTATGGT
CTACAACGCGCTTTCCATACACTCCCCTTTATGCGTCCTCATCAATAGCC
GAACCGTGTAGCCATTACCCCGAATGATAACCCCCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_d15.g1 MSMg01no092_d15.g1 CHROMAT_FILE:
MSMg01no092_d15.g1 PHD_FILE: MSMg01no092_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:01 2005
         (201 letters)



>mm_chr15_102820763_102821363
          Length = 601

 Score =  387 bits (200), Expect = e-112
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccgacagtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgggctgttagaggaaagagctaagtgagagcgcgcgctctacctaccgacagtgagc 260

                                                                       
Query: 61  agagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgcccagccccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagctgcagccgcccgagcccgcagccggcaccgcgcccccacctgcccagccccca 320

                                                                       
Query: 121 gcccagcagtccagcccgggggagccggccagcttggggttcggtcccggggggagggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagcagtccagcccgggggagccggccagcttggggttcggtcccggggggagggga 380

                               
Query: 181 gtttcggggatacccggcgg 200
           ||||||||||||||||||||
Sbjct: 381 gtttcggggatacccggcgg 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)