BAC Information

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BAC

Clone NameMSMg01-092N01
Chromosome15 (Build37)
Map Location 71,183,245 - 71,183,716
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051
Downstream gene1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092N01.T7 (MSMg01no092_n01.b1)MSMg01-092N01.TJ (MSMg01no092_n01.g1)
ACCAG310413AG310414
length702700
length of high quality
(start - end)
477 (130 - 606)289 (128 - 416)
definitionCHROMAT_FILE: MSMg01no092_n01.b1 PHD_FILE: MSMg01no092_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:48 2005CHROMAT_FILE: MSMg01no092_n01.g1 PHD_FILE: MSMg01no092_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGACCCCTTTTCTCCCACTTCTAAAATCTCCACTCCTGATT
ACATGTAAAAAAGAAAAAAATTAACACCTGTGGACATGCAAAGTGCAATC
TAAGTACTGCTTAGGAAAGGGGGACATATTTTCTAAAAGTGCCCCATGGA
TTAGTGCCTCTTGGACAATTATGTATTTCCCTCACTTAGAATGATTGGGA
ATTTAGTCCCAAGACTCAGAACTTATGCCACTAGGCCTTCAGAAAGGAGT
AAAAGAGGCCACTTTCACTGTCCCCCAGAAGGAACTAGTTAGATTAGATA
ATGGATTAATTTGGAGACAAAGGGTTCAGTCACAGTTTGGCTTTGGACCT
TTTGGTTCAACTTAGCTCTTGAGAAGTAGATTCAAAAAAAAATACATTAA
GACCTGCTTCCAGGAAAGGGGGTTCTATAGATGGCAGGAGGATTTCTTTT
CCACCTTGAGAAGCGAGGAGAAGAGAATGTAGAGAATGCTACATTAATGC
CTATTTAAATATCACAAATTCAAACTAAGATATGATTTATTCATTCCAAT
TTTTGAAAATAAGCTTAATCAGGATAGTTTAGGGAAGAGAATATCCTAAA
CATAAATATCCGGAGTTCCATCTTCTGCAAAAATAAAAAAAATCTACAAA
TA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAGAGGGTAGAGTCATGAGAG
TCTGAGCTAGCTCTAAAGGTCACCCAGAAAACAGTGTAATGGTAGTAAAT
ATTCTATAAGGCTGAGTGACTGATTTTATTTTGGTGATTGGGGAAAGTTG
ACTGTTACAAATTTGGGGTTAATTTTTCTTGGGCTATCTGTAATTCTCTT
AATAGCCATTCATTGCTTACTGTGTCTGTGTCTGACTCAAAATTCTAGTT
ATCACCAGCTAAAACTTTTTTTTTTAATTTTATTACGTTGTAGATGTCTT
TAGAAGCACCAGAAGAGGACATTGACTTCCATTACAGATGGTTGTGAGCC
ACCATGTGGTTGGTGGGAATTGCACTCAGAAGTTATGGAAGAGCAGCCAG
TGTTCTTAACCACTGAGCCATCTCTTCAGTCCAGCTAAAACTTTTTCAAA
TGAATTAATTTAACTGATCATAAATTTCCCCCAACTCACACTAAGAACAT
ACTCCGAAAGCAAGTGTAACCTTCCGGCAGGAATTTCTCCTTCTTTGCTT
TAACTGGGCCCGCCTTATCTTTCCACCAATGCCCTTGAAAAAGGGCCTTT
CCCAGGGAAACTTTCCTTGTGGTTCAGGGCTCAGGAAAGAATACTCCCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_n01.b1 MSMg01no092_n01.b1 CHROMAT_FILE:
MSMg01no092_n01.b1 PHD_FILE: MSMg01no092_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:48 2005
         (477 letters)



>mm_chr15_71183045_71183919
          Length = 875

 Score =  897 bits (464), Expect = 0.0
 Identities = 471/474 (99%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggacatgcaaagtgcaatctaagtactgcttaggaaagggggacatattttctaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtggacatgcaaagtgcaatctaagtactgcttaggaaagggggacatattttctaaaag 613

                                                                       
Query: 61  tgccccatggattagtgcctcttggacaattatgtatttccctcacttagaatgattggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgccccatggattagtgcctcttggacaattatgtatttccctcacttagaatgattggg 553

                                                                       
Query: 121 aatttagtcccaagactcagaacttatgccactaggccttcagaaaggagtaaaagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aatttagtcccaagactcagaacttatgccactaggccttcagaaaggagtaaaagaggc 493

                                                                       
Query: 181 cactttcactgtcccccagaaggaactagttagattagataatggattaatttggagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cactttcactgtcccccagaaggaactagttagattagataatggattaatttggagaca 433

                                                                       
Query: 241 aagggttcagtcacagtttggctttggaccttttggttcaacttagctcttgagaagtag 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 432 aagggttcagtcacagtttggctttggaccttttgtttcaacttagctcttgagaagtag 373

                                                                       
Query: 301 attcaaaaaaaaatacattaagacctgcttccaggaaagggggttctatagatggcagga 360
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 attc--aaaaaaatacattaagacctgcttccaggaaagggggttctatagatggcagga 315

                                                                       
Query: 361 ggatttcttttccaccttgagaagcgaggagaagagaatgtagagaatgctacattaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggatttcttttccaccttgagaagcgaggagaagagaatgtagagaatgctacattaatg 255

                                                                 
Query: 421 cctatttaaatatcacaaattcaaactaagatatgatttattcattccaatttt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctatttaaatatcacaaattcaaactaagatatgatttattcattccaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space:   403955
Effective search space used:   403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)