BAC Information

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BAC

Clone NameMSMg01-092P24
Chromosome15 (Build37)
Map Location 42,783,066 - 42,783,607
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P24.T7 (MSMg01no092_p24.b1)MSMg01-092P24.TJ (MSMg01no092_p24.g1)
ACCAG310553AG310554
length652743
length of high quality
(start - end)
546 (11 - 556)436 (182 - 617)
definitionCHROMAT_FILE: MSMg01no092_p24.b1 PHD_FILE: MSMg01no092_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:03 2005CHROMAT_FILE: MSMg01no092_p24.g1 PHD_FILE: MSMg01no092_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCGAGAGAATCCGCGGAATTCCCTGCCTTCCACCTTCCTCCCTGTTCTT
TAATTCCTAAAGTCAGGAGATTGCTGCAGTCCTCTAAGGGTCAGACACAG
CTGCTGTAAAATTTGCTTTTTAGTTTTTGAGTGGCAGTAAATCATGTTTT
AAACCTGTAAGCCCAAGTGCAAGTAATGATGGGACTGCCTGTAATAGAAG
ATTTTAAAAGAGTCTAGCTAGCTGGTATTGAAAGCACTGAGGTGTCTCCC
CTCCCCCCTAAGTTTATTTTCTTGGTTTCAGAGAAGTGCTGTGGACATGC
TCTTTTAGCAGTGGTAACCCACAGTCCTGCAGGAACTCCTCAAATGGGAG
AGATAGAGGCCATGTACACAGAGGTCAGAGTTATGCAGAATGCTGGAATT
TATATCAGTGTAAGCATTTTGGGATGTAGCAAAATAATTTTTAATCCTTG
AAGAGCTGAGAAATGCTTTGTAATTGTGATTGCCAACTTGAAAGGTCCTA
GAGACAAATCTCTAGGCTGCCTATGAGAGATTTTTAGATTAGGCACTTTC
TGTTANAAGGTCAATGGCAGCTGCAGCTCTCTAGGCATGTTCGTGGCTTG
AATGAAAAAGAGAAAGTGAGCTAAGCACCAGCAGTCATTGCTTTGCTTGC
TG
NNNNNNCCCCNCCCCCNNCNNCCCCCCCCCCCCCCCCNNNNNNNNCNAAT
TTANATCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAATGAAA
TGGCTGAGAAAAACCTGTAAAATTGTCCCCCATCCCTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCATCTCATACCAGTCAGAATGGC
TAAGTTCAAAAATTCAGGTGAAAGCAGATGCTTGCGAGGATGTGGAGAAA
GAGACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTGCTCTGGA
AATCATTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGTAGGAT
CCTGGAATACCTCTCCTGGCATATATCCAGAAGATGTTCCAACTGGTTTG
AAAGACACATGCTCCAGTATGTTCATAGCAGCCTTATTTATAATAACCAG
ACGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATTGGTAAAAAAAA
AAATAATAAAAGTGGTACATTTACAAAATGGAGTCCTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTTCTAGGCAAATGTTTGGACCTGGAGGGCA
TCATCCTGAGTGAAGTAACCCAATCACAAAAGAACTCAAATGATATGTAC
TCCTTGATAATTGGATATTAACCCAGAATCTTAGAATATAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p24.b1 MSMg01no092_p24.b1 CHROMAT_FILE:
MSMg01no092_p24.b1 PHD_FILE: MSMg01no092_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:03 2005
         (546 letters)



>mm_chr15_42782945_42783893
          Length = 949

 Score = 1002 bits (518), Expect = 0.0
 Identities = 535/542 (98%), Gaps = 3/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccctgccttccaccttcctccctgttctttaattcctaaagtcaggagattgctg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gaattccctgccttccaccttcctccctgttctttaattcctaaagtcaggagattgctg 604

                                                                       
Query: 67  cagtcctctaagggtcagacacagctgctgtaaaatttgctttttagtttttgagtggca 126
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 603 cagtcctctaagggtcagacacagctgctgtaaaatttgctttttcgtttttgagtggca 544

                                                                       
Query: 127 gtaaatcatgttttaaacctgtaagcccaagtgcaagtaatgatgggactgcctgtaata 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gtaaatcatgttttaaacctgtaagcccaagtgcaagtaatgatgggactgcctgtaata 484

                                                                       
Query: 187 gaagattttaaaagagtctagctagctggtattgaaagcactgaggtgtc---tcccctc 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 483 gaaggttttaaaagagtctagctagctggtattgaaagcactgaggtgtcttttcccctc 424

                                                                       
Query: 244 ccccctaagtttattttcttggtttcagagaagtgctgtggacatgctcttttagcagtg 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 423 ccccctaagtttattttcttggtttcagagaaatgctgtggacatgctcttttagcagtg 364

                                                                       
Query: 304 gtaacccacagtcctgcaggaactcctcaaatgggagagatagaggccatgtacacagag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtaacccacagtcctgcaggaactcctcaaatgggagagatagaggccatgtacacagag 304

                                                                       
Query: 364 gtcagagttatgcagaatgctggaatttatatcagtgtaagcattttgggatgtagcaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtcagagttatgcagaatgctggaatttatatcagtgtaagcattttgggatgtagcaaa 244

                                                                       
Query: 424 ataatttttaatccttgaagagctgagaaatgctttgtaattgtgattgccaacttgaaa 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 243 ataatttttaatccttgaagagctgagaaatgctttgtacttgtgattgccaacttgaaa 184

                                                                       
Query: 484 ggtcctagagacaaatctctaggctgcctatgagagatttttagattaggcactttctgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ggtcctagagacaaatctctaggctgcctatgagagatttttagattaggcactttctgt 124

             
Query: 544 ta 545
           ||
Sbjct: 123 ta 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 949
Length adjustment: 10
Effective length of query: 536
Effective length of database: 939
Effective search space:   503304
Effective search space used:   503304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)