BAC Information

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BAC

Clone NameMSMg01-097K13
Chromosome15 (Build37)
Map Location 88,487,903 - 88,488,243
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340, Zdhhc25
Downstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097K13.T7 (MSMg01no097_k13.b1)MSMg01-097K13.TJ (MSMg01no097_k13.g1)
ACCAG314034AG314035
length761677
length of high quality
(start - end)
39 (223 - 261)340 (52 - 391)
definitionCHROMAT_FILE: MSMg01no097_k13.b1 PHD_FILE: MSMg01no097_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:28 2005CHROMAT_FILE: MSMg01no097_k13.g1 PHD_FILE: MSMg01no097_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAAAAAAANNNNNNNNAAANNAAAANNNTTCCACCCCAAAGGCAAA
NNNNAGATCTAAACTTGGGCGCTAATAGAGTACTATTTCGGAGGAGGGNG
GAATTANTTAGTTTCTTAAAGAGTGAAGNNTGAGAATAATTTGTTNTTAT
TTTAGATGGGATAATTAAGCCCCAGGATATGAGNAGGGGGTTTTCTTCTA
TAATTATTATTTTTTGGGAAGTCTGAACTGTGCCATGAGCATGGAGAAAG
CATATCCAAGTCTAGTAGAAGAGAGCACGGTGTGGCTCTGTAGGCAAGGT
GTACTGGCTGGTTTTGTGTGTCAACATGGCACAAGCTAGAGTAGTTATCA
CAGAGAAAGGAGCCTCTTTTTGTTTTATACGCTCCCATGAGATCTAGGTG
TAAGGNATTTTTTTTTTTCCCCCCCCCCCCCCCAGGAAAAATTGTGGGTG
GAGACATCAATTTTTGGNNTGAAAAAAAAAAAAATCTATACGAGGGGGGG
GTGAGCCAGCCAAGGGAAGCAAGTCATGTCAGTAATATCACTCCATAGGA
CCCGCATCAGTTTTTTGTCTACCGGTGGCTGAACCCGTGTGTGCCCCGGG
CCCCAAATTACATTGGTGAAGAAACCGCCTGTATATCTTGCGCGAATAAT
TTATCTCTTTACTCGAGTAATTTAATCTTGTGGAAGATGTCTTGTTTTTG
CCTATTCCATTTTTTTTTTTTGATTGCGCTGTTTTACATATACCCCTATT
TGATTTAGGGC
GGCGGCCGCCTGGTTCTCGACATTAGGTGAACTATAGAAGTATTCCCGGA
ATTCTGTGTTCGATTGAGAGTCCTGCCTTGGTGAATAAGGCAGAGGAGCC
ACTGAGAACGATTCCTGACATGGATCACCCTTCCACATGCAAACACACAG
ACCTGCACTTGCACCCCATAGACACTTGTGCATCCATGCACATGGAAAAA
CTTGCATTCACACATGCACACCACACACATACAAGGTAAAAACAAAATAA
AACAAAACTTGAGAGCCAAGGCCATCTCAGAAAAAGAGTCTAGTTGAAGG
GTTCCCACTTCCTTACTTCACAAGGTACTATATGACAGACAGAGGATGAC
ATTGGGCTCTGTTCTGCTTGCCTGTCTGCCTGTCTGCTTGTCTGTCTGTC
TGTCTGTCTGTCTCCCTATTCCCTTAACACAGAGTCTTTCGTGAACCTGC
AGCTTGCAGATGTCTTTGGCCTAGCTCCAAAGATCCTCCTGTCTCCATTT
CCCTCAACTCTGGGATCACCGCCCCAAGTGACCATGGCAGACTTTCTTAC
ACGCGTGCTTGGGATCGAAAATCATGTCCCCACGCTCATGAAAGAAGTGC
TCCTATCCATGACCCCATCTCCCAAGACCCCCAACTGCTTCTTTTTTTCT
TTTCTTCAAAACGTACCGCCTGCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_k13.g1 MSMg01no097_k13.g1 CHROMAT_FILE:
MSMg01no097_k13.g1 PHD_FILE: MSMg01no097_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:29 2005
         (340 letters)



>mm_chr15_88487703_88488443
          Length = 741

 Score =  627 bits (324), Expect = 0.0
 Identities = 337/342 (98%), Gaps = 3/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtgttcgattgagagtcctgccttggtgaataaggcagaggagccactgagaacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctgtgttcgattgagagtcctgccttggtgaataaggcagaggagccactgagaacga 482

                                                                       
Query: 61  ttcctgacatgga--tcacccttccacatgcaaacacacagacctgcacttgcaccccat 118
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcctgacatggatctcacccttccacatgcaaacacacagacctgcacttgcaccccat 422

                                                                       
Query: 119 agacacttgtgcatccatgcacatggaaaaacttgcattcacacatgcacaccacacaca 178
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agacacttgtgcat-catgcacatggaaaaacttgcattcacacatgcacaccacacaca 363

                                                                       
Query: 179 tacaaggtaaaaacaaaataaaacaaaacttgagagccaaggccatctcagaaaaagagt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tacaaggtaaaaacaaaataaaacaaaacttgagagccaaggccatctcagaaaaagagt 303

                                                                       
Query: 239 ctagttgaagggttcccacttccttacttcacaaggtactatatgacagacagaggatga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctagttgaagggttcccacttccttacttcacaaggtactatatgacagacagaggatga 243

                                                     
Query: 299 cattgggctctgttctgcttgcctgtctgcctgtctgcttgt 340
           ||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 242 cattgggttctgttctgcttgcctatctgcctgtctgcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)