BAC Information

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BAC

Clone NameMSMg01-098A04
Chromosome15 (Build37)
Map Location 44,768,463 - 44,768,741
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik
Downstream geneEG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098A04.T7 (MSMg01no098_a04.b1)MSMg01-098A04.TJ (MSMg01no098_a04.g1)
ACCAG314300AG314301
length703699
length of high quality
(start - end)
589 (55 - 643)281 (55 - 335)
definitionCHROMAT_FILE: MSMg01no098_a04.b1 PHD_FILE: MSMg01no098_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:58 2005CHROMAT_FILE: MSMg01no098_a04.g1 PHD_FILE: MSMg01no098_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTTCAAAAGAGGATCCGCGGAATTCCAATA
GCAATCTTGAATGGCTGAGAAGCACCTAAAATAATGTTAAAAATCCTTAG
TGATCAGAGAAATGCAAATCAAAGGACCCTGAGATTCCACCTTACACCAA
ACAGAATGACTAAGATCAAAGCCTCAGGTGACAACACATGTTGGCAAGGA
TGTAGAAAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGCAAAATGTA
CAACCACCCTGGAAATCAAACTGAAGGCTCCTCAAAAATTGGAAATAGAT
CTACCTGAAGACCCAGTAATACCACTCATGGGAATATACCCAAAAAGATG
TCCCACCTTTCCACAGGGGTATGTGTACCACGATATTCACAGCGGCCTTG
TTTGTGATAACTAGAAGATAGAAACAAGCCAAATGTCCCAGGACAGAAGA
GTGGATACAGAAAATGTGGTTTATTTACACAATGGAATACTACTCAGCTA
TTAAGAAGGAGGACTTCCTGAGTTTTCCAGCCAAATGGTTGGAACTAGAA
AATATCATCCTAAGTTAGGTAACTCAGGCCCAAAAGGACACACATGGTAT
ATACTCACTAAGTATATATTGGGGGTGGGGGGAGTACAGAATACCCAAGA
TACAGTCCACAGAACTTAAAAAGTTCAACAAGCTGAAGGGTCCAAGTGAG
TAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGTATCTCCAAGAAGTAGAATGTGCAAATGCATACAGGAAAAAAGG
ATTATCTAAAAGTGGTCTTACTTAATCATTCCACCACTCCCAATGACATA
TTTGGAGATTCTGTGCTTTCTGTTCCCAAAACTTTATACTTAGAATATTT
GCATGTTTTTTCTCCAAAGGATTGTCCTTGGCAGGAGACACACAGGGGTA
ACTAGTAAACTCACTAAAACAATCATCATCTCTTTTTCATATACTTTGTA
CCTTGTGCATCTGGAATCTGGGGAAAATGTCATGTATGTATAAGTCACCA
ACTTTCACTGGGAAGAGGACAAAGGACACTCCCATACAGTGGAAAAGAAG
TGAACATGTGTGGCACTTAGTAGGTCCAGCTGGTTTTCCTGCCACCCTTG
GCTTCACTGAAACCATGAATAAACAAGCAGAGCCACATACTAGAGAAACG
CGATTACTATGTGCACAAACACCCCTCATATGACTCATTTGGTCATACCT
GCTGGTAATGCATCTGACTCAAATACCAAACTAATTAAGCTGCACAATGT
TTGAAATTGCTGATTGCACCAATCCGAACGCATTTTTGTTCTGCGAAACC
CCCAGTGATGTGTCTCCAATTAACCACACTAACCTTGGTCCCAATAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_a04.g1 MSMg01no098_a04.g1 CHROMAT_FILE:
MSMg01no098_a04.g1 PHD_FILE: MSMg01no098_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:58 2005
         (281 letters)



>mm_chr15_44768263_44768943
          Length = 681

 Score =  493 bits (255), Expect = e-144
 Identities = 273/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatctccaagaagtagaatgtgcaaatgcatacaggaaaaaaggattatctaaaagtg 60
           ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 201 tgtatctccaagaagtagaatgtacaaatgcttccaggaaaaaaggattatctaaaagtg 260

                                                                       
Query: 61  gtcttacttaatcattccaccactcccaatgacatatttggagattctgtgctttctgtt 120
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtcttacttaatcactccaccactcccaatgacatatttggacattctgtgctttctgtt 320

                                                                       
Query: 121 cccaaaactttatacttagaatatttgcatgttttttctccaaaggattgtccttggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaaaactttatacttagaatatttgcatgttttttctccaaaggattgtccttggcag 380

                                                                       
Query: 181 gagacacacaggggtaactagtaaactcactaaaacaatcatcatctctttttcatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacacacaggggtaactagtaaactcactaaaacaatcatcatctctttttcatatac 440

                                                  
Query: 241 tttgtaccttgtgcatctggaatctggggaaaatgtcat 279
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggaccttgtgcatctggaatctggggaaaatgtcat 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)