BAC Information

Click to search

BAC

Clone NameMSMg01-098E19
Chromosome15 (Build37)
Map Location 99,996,682 - 99,997,131
singlet/doubletsinglet
Overlap geneDip2b
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
Downstream geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E19.T7 (MSMg01no098_e19.b1)MSMg01-098E19.TJ (MSMg01no098_e19.g1)
ACCAG314516AG314517
length678768
length of high quality
(start - end)
450 (39 - 488)467 (129 - 595)
definitionCHROMAT_FILE: MSMg01no098_e19.b1 PHD_FILE: MSMg01no098_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:22 2005CHROMAT_FILE: MSMg01no098_e19.g1 PHD_FILE: MSMg01no098_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTATCAAAGAGGATCCGCGGAATTCATTCTGTCCCCAGCTGGCCTTGA
ATTCATGGAGATCCACCTGCCTTTGCTTCCTGAGCAAGGACTACAGGCAT
GCACCGCATGATGCCTGAGTCTGTCTGTATCTTCTCTTTAACTGAAGGAC
TCAGCCATTTATCTAGGTGCCAAACCAGGAATGTGAGTGTTTCTTGCCCT
CTCTCTATTAAGGATCAGCTGGCGAATTTGGCCGACCCTGCTTGCCCCCT
CCCTTCAGCAATACCTACTCCTCTCTTAGCCATTCCACGGGCTTCTTCAT
TCAGCTCACGCCAGTCACTTGTTAAGGGGGGCAGGCTGGAGAAGAGTACT
GGCTGCTCTTACAGAGGACCCGGTTTAGATTCCAGCACCCACTTGGCCCT
CACTACAGTCCAGAACTCCAGTTCCAGTGGATCTGATACTATCTTCTGGC
CTCGGGACACTGTACAAGCATGGTCCATTTATGGACACTCAGATAAAATA
CTTATACCCATAACATGCACAGAGGGACAAACAACACAAAACATAGCCTA
AAACCTGGTGCTCCCATTAGAACTGAGTCAATCTAAATACATCTTTTCTT
CCTAAACTACATTATTATTTGTATTATGACCTGCGCAGAGCACACGTACA
CTCCACTATACCCTCATGGAGACTGGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCTCNCCTTATGTG
TGCNNCCCTATGATATGGGTGGCCTGGCGGCCGCCTGTTCGAAAAAGGGA
GGTGACCTATAGAATACCCGCGGAATTCCTAACCTTTTGGACTCATGTGG
ACATAAAAACACAAACCATTTACATAATTAAAATATAAATCTTGGGCTGG
AGAGATGGCTCTGATTTATATTTTAAGTCCCGAGTTAAAATACCAGCAAC
CACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCCTCTTCTGG
TGTTTATGAAGACAGCTACAGTGTACTCACATAAAATAAATAATTCTAAA
AATAAATAAAGAAATCTTTAAATTTGTCTATCAATCTATCTATCTTGGGC
TTGAGAATTGGCTCAGCAGTTAAGAACACTTATTGATGCTGCAGAGAACT
AGAGTTCAATTTCCAGGACACAGTGGCTCACAACAATTTTCATTGGGACT
GGCCACACATGTGGTGCACACATAAAGACAAAAACCATACACATAAGAAA
ATAATAACGTAAATGACCAGAAATACAAACTTTAATCCCCCAAACATGAA
GGGTATAGGCAGGTACAAAAAAAGGAAAATAAAAGGTTGTGTTATAGCTG
TGTGTGGCGGCGCAAGCCTTTAGTCCCAGCACTTGGGAGGCATAAGCAGG
CGCACTTTCGGACCTTGAAGCCCAGCCTGCTCCTAATAGCAAGTTCCAAA
AATTTCTGCTGTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e19.b1 MSMg01no098_e19.b1 CHROMAT_FILE:
MSMg01no098_e19.b1 PHD_FILE: MSMg01no098_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:22 2005
         (450 letters)



>mm_chr15_99996545_99997394
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggccttgaattcatggagatccacctgcctttgcttcctgagcaaggactacaggc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agctggccttgaattcatagagatccacctgcctttgcttcctgagcaaggactacaggc 528

                                                                       
Query: 61  atgcaccgcatgatgcctgagtctgtctgtatcttctctttaactgaaggactcagccat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atgcaccgcatgatgcccgagtctgtctgtatcttctctttaactgaaggactcagccat 468

                                                                       
Query: 121 ttatctaggtgccaaaccaggaatgtgagtgtttcttgccctctctctattaaggatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttatctaggtgccaaaccaggaatgtgagtgtttcttgccctctctctattaaggatcag 408

                                                                       
Query: 181 ctggcgaatttggccgaccctgcttgccccctcccttcagcaatacctactcctctctta 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctggcgaatttggctgaccctgcttgccccctcccttcagcaatacctactcctctctta 348

                                                                       
Query: 241 gccattccacgggcttcttcattcagctcacgccagtcacttgttaaggggggcaggctg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gccattccacgagcttcttcattcagctcacgccagtcacttgttaaggggggcaggctg 288

                                                                       
Query: 301 gagaagagtactggctgctcttacagaggacccggtttagattccagcacccacttggcc 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gagaagagcactggctgctcttacagaggacccggtttagattccagcacccacttggcc 228

                                                                       
Query: 361 ctcactacagtccagaactccagttccagtggatctgatactatcttctggcctcgggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctcactacagtccagaactccagttccagtggatctgatactatcttctggcctcgggac 168

                                         
Query: 421 actgtacaagcatggtccatttatggacac 450
           ||||||||||||||||||||||||||||||
Sbjct: 167 actgtacaagcatggtccatttatggacac 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)