BAC Information

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BAC

Clone NameMSMg01-101H01
Chromosome15 (Build37)
Map Location 95,245,117 - 95,245,553
singlet/doubletsinglet
Overlap geneNell2
Upstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101H01.T7 (MSMg01no101_h01.b1)MSMg01-101H01.TJ (MSMg01no101_h01.g1)
ACCAG316852AG316853
length961722
length of high quality
(start - end)
34 (134 - 167)437 (81 - 517)
definitionCHROMAT_FILE: MSMg01no101_h01.b1 PHD_FILE: MSMg01no101_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:39 2005CHROMAT_FILE: MSMg01no101_h01.g1 PHD_FILE: MSMg01no101_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTTTNTTTTTTNTTTTTTTTTTCTTTCTTTTCTNTTACATAT
TTTTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGA
GCCGCGGAATTCTGAAATCTTCCCCGATCTCGAATGCCCATATATTCTGA
GTGTTCCCATTGATGTCACTGAGGAGGTGAGAACTGTTGCTCTCTTATCA
TTTTCTATATTTTAGAATACCTGTCACTAGCTTGATTGTCCCACTGTCAT
TGTCACGACCTATTTGATTTGTTATTTTCCTTTTTTTATGATTTGATTGG
TTTTCACTCTCTTTGTTCTCTTTGTTTACTTTGATCCGTATCCCTCCCCT
TCCTCGCTCGCCTCTCTCTTAATTTTTTCTTTTGTTATCTATCCTTTTTC
TTTTTTTTCTTCTTCCTCCACGTTTTCTTCCCTCCCCTGGCCCCTTTCTC
CGTCTCTCTCCTTCCGTTTTTTATTTTCTCTCTTTCCTTGTTTATATCAC
TCTATTTTATTTATTTTCTTATTTTCTATATCTTCACCTATTTTCTCTTA
TATATTCTCTTCCTTCTTTCTTGCATCATCATTTAATATATCTATACAAT
ATCCTCTCGCACTTTACATTCCCACTTACTCTCTTCATCTATTATATTGT
TTATTTATCATACTTACTCCTTTACCTATCTCTCTCCTCTTCCTCTCCAC
ACGCCCTTCGTCGTACTCACCCCCTCCCCCTACTTCACCACCAGATGTAC
CATCTTCTCTATTACTACTTCTTTACTCTCTCCATTACCGTTTACTCTAC
ATAGCACCATCCTTTTCAGTCTCTTACTTTCTTTAGTTGCAATTGTTTTT
CTTATTTCCTCTCTTCCTCATCTATCATTTCTGATATTTTTATACGATCT
TTTTTTTCTTCTCTTTTTCTTCTTCTAATCTTATTCNATCTGTTCTACTA
CTCCACCGCTT
NACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGAAGGCACAGTCAGA
GGTGAGCAGAGATGAGTTGAAAGCAACTTTGTAGTCAGAATCTCAAAGGC
TCCTGTAAAATTGCTAGTGAGAAGCTGTGTTATTGATCAGTCTGATTATA
TGTTTTTCTGCTAACATTTTGATGTGCTAAATGTAGATGGTAATACAGAT
TGACTTAACTTTGATTGGAGTTTTGTTTATGTTTAGAAAAAAATCAGTCA
AACGTAGAGACTTATAGAGATTTAAATTGTATAGAGAAGACGACAAGGAG
AGTTGAGATTCCTCATTCATTCTGGGGTGGGGAACAGTTGAGATGGGCAC
ACATATGTACCAGATGTGTGCTGTGTGTTATACATAGGAGTCCTTCATAG
GACCTGAATGTACAGCTACTGTCTTGGAGCTCTATAGGGAATGGTCCTCT
TGTGTGAAATATGGAATCAATGATAGCTACAATGCCACGGGGGAAACCTA
ACTGAAGGTGCAGAGGATGTGTGGTCTGGGTAGTGAGGGTAACACTAGTT
GGCTGCGCATAACGATGTAAAGAAAGCCAAAGTCAGCTACAAAGGAAAAG
CCACAGGGCTCGCCCACCTGGGCTATAAAGATAAAAAAAGGACCATTGGT
CCATTTTAAATTGCTGACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_h01.g1 MSMg01no101_h01.g1 CHROMAT_FILE:
MSMg01no101_h01.g1 PHD_FILE: MSMg01no101_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:39 2005
         (437 letters)



>mm_chr15_95244917_95245753
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagaaggcacagtcagaggtgagcagagatgagttgaaagcaactttgtagtcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agagagaaggcacagtcagaggtgagcagagatgagttgaaagcaactttgtagtcagaa 578

                                                                       
Query: 61  tctcaaaggctcctgtaaaattgctagtgagaagctgtgttattgatcagtctgattata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tctcaaaggctcctgtaaaattgctagtgagaagctgtgttattgatcagtctgattata 518

                                                                       
Query: 121 tgtttttctgctaacattttgatgtgctaaatgtagatggtaatacagattgacttaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtttttctgctaacattttgatgtgctaaatgtagatggtaatacagattgacttaact 458

                                                                       
Query: 181 ttgattggagttttgtttatgtttagaaaaaaatcagtcaaacgtagagacttatagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgattggagttttgtttatgtttagaaaaaaatcagtcaaacgtagagacttatagaga 398

                                                                       
Query: 241 tttaaattgtatagagaagacgacaaggagagttgagattcctcattcattctggggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttaaattgtatagagaagacgacaaggagagttgagattcctcattcattctggggtgg 338

                                                                       
Query: 301 ggaacagttgagatgggcacacatatgtaccagatgtgtgctgtgtgttatacataggag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 337 ggaacagttgagatgggcacacatatgtaccagatgtgtgctgtgtgttatacatagggg 278

                                                                       
Query: 361 tccttcataggacctgaatgtacagctactgtcttggagctctatagggaatggtcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tccttcataggacctgaatgtacagctactgtcttggagctctatagggaatggtcctct 218

                            
Query: 421 tgtgtgaaatatggaat 437
           |||||||||||||||||
Sbjct: 217 tgtgtgaaatatggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)