Query= MSMg01no101_m13.b1 MSMg01no101_m13.b1 CHROMAT_FILE:
MSMg01no101_m13.b1 PHD_FILE: MSMg01no101_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:07 2005
(644 letters)
>mm_chr10_66386104_66387147
Length = 1044
Score = 1152 bits (596), Expect = 0.0
Identities = 624/648 (96%), Gaps = 23/648 (3%)
Strand = Plus / Minus
Query: 20 ctcctctggtgtcagagttctttagctaagaatccacttagcccttaagtgaatagagga 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ctcctctggtgtcagagttctttagctaagaatccacttagcccttaagtgaatagagga 985
Query: 80 gctgaacatactcctgcccccggggataggtgctaattgttttcagtcaattagttattc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gctgaacatactcctgcccccggggataggtgctaattgttttcagtcaattagttattc 925
Query: 140 aacagtatttcagaatcttaaaacctaaacttctagccagtagagtaggtaggtatt--- 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aacagtatttcagaatcttaaaacctaaacttctagccagtagagtaggtaggtattcaa 865
Query: 197 --------------------cagctgtgagcaatagataagtgagtggaactcacttaat 236
||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cgctcaaataaatgtcggaacagctgtgagcaatagataagtgagtggaactcacttaat 805
Query: 237 tctggcttgattcagaagttctctctgatattacacttatccgaatgttagagacccaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tctggcttgattcagaagttctctctgatattacacttatccgaatgttagagacccaat 745
Query: 297 tttaactgacatttttcctaaaaccaggagagtcatcgttccaataaagttggtcctaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttaactgacatttttcctaaaaccaggagagtcatcgttccaataaagttggtcctaat 685
Query: 357 gaagacgggcagaggaagagaatgggggcattaagaacattgggaggtgtttctctgcct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagacgggcagaggaagagaatgggggcattaagaacattgggaggtgtttctctgcct 625
Query: 417 gtctggagatcagacccacaacctcacgaattgtaggcagtgttgttcttaactgatgag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtctggagatcagacccacaacctcacgaattgtaggcagtgttgttcttaactgatgag 565
Query: 477 tcaagtgtccagtgtatcaaatgggaatgccttatatcgtccccaggcctttttcctcgg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcaagtgtccagtgtatcaaatgggaatgccttatatcgtccccaggcctttttcctcgg 505
Query: 537 gttcagtataagtgtcttcacaggtcgcctgggtcaaaaagagccaggggaggaccacat 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttcagtataagtgtcttcacaggtcgcctgggtcaaaaagagccaggggaggaccacag 445
Query: 597 acttacattcgagtgacagctcaccagtcctggtaacaccagttccag 644
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttacattcgagtgacagctcaccagtcctggtaacaccagttccag 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_m13.g1 MSMg01no101_m13.g1 CHROMAT_FILE:
MSMg01no101_m13.g1 PHD_FILE: MSMg01no101_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:08 2005
(188 letters)
>mm_chr15_59845854_59846442
Length = 589
Score = 199 bits (103), Expect = 7e-56
Identities = 176/219 (80%), Gaps = 38/219 (17%)
Strand = Plus / Plus
Query: 1 attctttgcctaaaatattaaaacaacacacaagcacctatatttatattttccc----- 55
||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 attctttgcctaaaatatt-----aacacacaagcacctatatttatattttcccatcag 255
Query: 56 -agtgctagccctgtaaaaaagagcaattccctctaagccatttaaaatcagagattgta 114
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 256 tagtgctagccttgtcaaaaagagcaattccctctaagccatttaaaatcagagattata 315
Query: 115 atttatgtttat------aa-----at--------tgatgtgag-atcattctcaagta- 153
||||||||||| || || |||||| || |||||||||||| |
Sbjct: 316 gtttatgtttatctggggaaccgctatgatctccttgatgt-aggatcattctcaaggag 374
Query: 154 ---aacaaacaacaggc-aagcaaatcagaacttgaagc 188
|||||||||||||| || ||||||||||||||||||
Sbjct: 375 acaaacaaacaacaggccaa-caaatcagaacttgaagc 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 589
Length adjustment: 8
Effective length of query: 180
Effective length of database: 581
Effective search space: 104580
Effective search space used: 104580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
