BAC Information

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BAC

Clone NameMSMg01-104C16
Chromosome15 (Build37)
Map Location 69,701,340 - 69,701,708
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104C16.T7 (MSMg01no104_c16.b1)MSMg01-104C16.TJ (MSMg01no104_c16.g1)
ACCAG318846AG318847
length711715
length of high quality
(start - end)
494 (62 - 555)429 (72 - 500)
definitionCHROMAT_FILE: MSMg01no104_c16.b1 PHD_FILE: MSMg01no104_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:20 2005CHROMAT_FILE: MSMg01no104_c16.g1 PHD_FILE: MSMg01no104_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTATACGACTCCTATTCCGAGAGGACCGCGGAATTCT
CCCTATCCAAACCAAATGGCTGAGAAGCACCTGCAAAATGTTTGATACCT
TTGATCATCAGAGAAATGAAAATAAACAACAACAACAAAAACATGAGATT
CAACCTCATACCAGTCAGAATGGCTAAAATAAAAAATTCAGGTGACATCA
GATGCTGGTGAGGATATGGAGAAAGAGGTACACTCCTCCATTGTTGGTGG
GATTGCATGCTGGTACAACTATTCTGGAAATCAGTCTGGCAGTTCTTCAG
ATAATTGGGCATAGTGCTACCAGAAGATCCAGCAATACCTCTCCTGGCTA
TATACCTAGATGATGTTCCAACTTGTAATAAGGACACATGTTCATAGCAG
CCTTATTTATAATAGCCATAACCAGCAAAGAACCTAGATGTTCCTTAACA
GAGAAATGGATACAGAAAATGTGATACATTTACACAATGGAGTAGTACTC
AGCAATTAAAAACAATGAATTCTTGAAATTCTTAGGCAAATGGATGGATC
TGGAGGGTATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACAAACTT
GGTGTTCACTCTCTGATATGAGGATATTAGCCCAGAAACTTAGAATACCC
AAGATACAATTTGCACAACACATGATACTCTAGAAGAAGGAACACTAAAG
TGTGGATACTC
ATACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGTACAATATATGAATGGTAAGGGCCT
GAAAATATGTAGTTTTATCATTACTTTCATCAGAATAAGAAAGTAATGTC
TGGCAAGTATGTAAAAGGTACCTCATAAGAGGCAGCTGCCCATGTTTGGT
TGATAGCACTGGTATTTCAAAATGTCTATGTTTGGCATTTGTGGTGGTTC
AAATATGCTTGGCCCAGGGAGTGGCACTTTTAGAAGGGGTACACTTGTTG
GAGTTGGTGTGACCTTTTTAGAATAAGTGTGTCATTGTGGCCATAGATTT
TCATACCCTCCTCCTAGCTACCTACAAGGCACTCTTCTAGAGGCATTCAT
ATGAAGATATAGAACTCTCAGCATCTCCTGCACCATGTCTGCCTGGATGC
TGCCATGTTCCTGCCTTTATGATACTGAACTGTAACTCGGAACCTTTAAT
CCAGACCCAATTAATTGCTGCACTTTGTAACACTCATGTTGTCTCTTCTC
TGCACTAACTCCCGAATATGGTTTTACAAATCTACTGACCTCTACAAGTT
TTTTGTTCTCATCACTCTCATTACTGCATCCTTTTTCCATATCCCGCTCA
TGGTTGCAGCGCCCCTTGTTACTTCTTGACTCCCTACCCCCTCCTTGTCC
TCTAATTTTATCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_c16.g1 MSMg01no104_c16.g1 CHROMAT_FILE:
MSMg01no104_c16.g1 PHD_FILE: MSMg01no104_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:20 2005
         (429 letters)



>mm_chr15_69701340_69702169
          Length = 830

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 1/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtac-aatatatgaatggtaagggcctgaaaatatgtagttttatcattactttcat 59
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 369 tcagtacaaatatatgaatggtaaggacctgaaaatatgtagttttatcattactttcat 310

                                                                       
Query: 60  cagaataagaaagtaatgtctggcaagtatgtaaaaggtacctcataagaggcagctgcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagaataagaaagtaatgtctggcaagtatgtaaaaggtacctcataagaggcagctgcc 250

                                                                       
Query: 120 catgtttggttgatagcactggtatttcaaaatgtctatgtttggcatttgtggtggttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catgtttggttgatagcactggtatttcaaaatgtctatgtttggcatttgtggtggttc 190

                                                                       
Query: 180 aaatatgcttggcccagggagtggcacttttagaaggggtacacttgttggagttggtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaatatgcttggcccagggagtggcacttttagaaggggtacacttgttggagttggtgt 130

                                                                       
Query: 240 gacctttttagaataagtgtgtcattgtggccatagattttcataccctcctcctagcta 299
           | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 129 ggcctttttagaagaagtgtgtcattgtggccatagattttaataccctcctcctagcta 70

                                                                       
Query: 300 cctacaaggcactcttctagaggcattcatatgaagatatagaactctcagcatctcctg 359
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 69  cctacaaggcactcttctagaggcattcatatgaatatatagaactctcagcatctcctg 10

                    
Query: 360 caccatgtc 368
           |||||||||
Sbjct: 9   caccatgtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)