BAC Information

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BAC

Clone NameMSMg01-108L05
Chromosome15 (Build37)
Map Location 25,692,105 - 25,692,341
singlet/doubletsinglet
Overlap geneMyo10
Upstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, LOC100040602
Downstream genePpia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044, Fbxl7, LOC622531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108L05.T7 (MSMg01no108_l05.b1)MSMg01-108L05.TJ (MSMg01no108_l05.g1)
ACCAG322078AG322079
length745870
length of high quality
(start - end)
237 (84 - 320)---
definitionCHROMAT_FILE: MSMg01no108_l05.b1 PHD_FILE: MSMg01no108_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:38 2005CHROMAT_FILE: MSMg01no108_l05.g1 PHD_FILE: MSMg01no108_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCGTCGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGTATC
GATCCGCGGAATTCAGATGCTCCCACACAACAGGCCTCCACTTACGTATT
TCTGAGACTTGTGTAACACTATCTTTTGGATTCTTTTTGGTGCTTGCGAT
GATGAAACTTGAGAAATGGCTCTGCTTGAGACAGCCTCTGAACAGCTGGA
GAGTCAGGTGACCTGGCTTCCCACCAGGGTGGCTTTCAGGACCGGGCCTG
CCTCTTCTGCTTCTGTAAGCAAAAGTAACTAATCTGTTAACTGGCGTGAT
TCCAGCCTCCCTGCCAGGCAGAGTCCTTTTTCTACCATTGAATAGTCCCT
GAATGATATCTCCCCGGTTTGGCGATGATGCTATCCGCATGTTCTCCTCC
AAGCTGCTCCCAAATCCACTCCTCACCGGACAGCCAGACTCTATCCTTTA
TAGATCCCCATTAGCCATTTTACCCTTCTGAATTCCTGCCTGTTGTCCCA
TCTCTGAACATTGCATGAACTGTCTCCCTTCTGGTTCATTATTTTACCCG
CCCTTCCCTTCACCTCTGGATTTACTTTGAGAATGTCCACTTATTGTTTT
GATATCTTCGCCTATAAAATACTTGCATTCTTGCTCTGATATCCCAATTT
GCTACCGGAACATATCCACCAAATTACATTTACTTTTTTTGTCCACATCA
CTTACACCACTTGCTCCCTGTTTGGTAATTTCCTTCTTTTTAGGC
TTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTNNNTTTTTTTTTT
TTCTTTTTTNTNTTTTTTTTTTTTTTTATTTTTTTTTTTTCTTATATTTT
CTTTTCTTTTTTTTTTTTTTCTTTCTCTTTTTTCCCCTTCTCCCACTTCT
GCCTCTGACTGCCCAGCCTTCCTCTCGCCACACGCCCCTTTCCGACTTCT
CGCTCGTCCCCCCCCTCTTCCCCCCCCTCCCCTGCGTTTCCTCTCTCTAC
TCTTCTCTCTTCTCCGTTTCCCTCGACGCTTTATGTAGTATGCGTCAACT
CCCATCGACAGCAGCAGTTCGATAACCGCGGCGCCTCCCGTGTAAGCTCT
CGACGTTCTCCACTCCGTGCCCACGGCGGAAAATAACTCTGCGATCTACA
CCCGCCTTACAATTACATCTGGTCCGGGGCAGCGCGATCGACCGTCCCTA
TTCCTTATGTAGCGCTTTGTGTTTACTTAACTACACCCTATTTCTTCAAC
CCCTCTCTAGTTTCTTCTAACGTCTCCCTTGCCGTCGTATCTCCTCGCCT
TCCTCATAACCTCTGGCGCATGTCGACAGAAGCTCTATAGTGAATACGGG
CTAAAGGATAACATGGAACACATGTGGAAGGAGGGAACCATACAGAAATA
GGATAGAGCGCAAGCAGAAACCTCATGAGGTGCATCGCGAATAGAAACGT
AAGAGGGAGAAAGAGCATATAGATGAGATGGAGCAGAAATAAGATGGACC
ACTCCCGGTGAAAGATAAGAAGATGGTAGACCAGCAGCAACGAAAAATCA
GCGACACGCAATATTTATAACATAGATTCCCTCGCCACACGCCCCCCTAT
GGTTTTTTGTCCTACACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_l05.b1 MSMg01no108_l05.b1 CHROMAT_FILE:
MSMg01no108_l05.b1 PHD_FILE: MSMg01no108_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:38 2005
         (237 letters)



>mm_chr15_25691905_25692541
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctccacttacgtatttctgagacttgtgtaacactatcttttggattctttttggtgc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gcctccacttacgtatttctgagacttgtgtaacactatcttgtggattctttttggtgc 260

                                                                       
Query: 61  ttgcgatgatgaaacttgagaaatggctctgcttgagacagcctctgaacagctggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcgatgatgaaacttgagaaatggctctgcttgagacagcctctgaacagctggagag 320

                                                                       
Query: 121 tcaggtgacctggcttcccaccagggtggctttcaggaccgggcctgcctcttctgcttc 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggtggtctggcttcccaccagggtggctttcaggaccgggcctgcctcttctgcttc 380

                                                                    
Query: 181 tgtaagcaaaagtaactaatctgttaactggcgtgattccagcctccctgccaggca 237
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tgtaagcaaaagtaactaatctgttaactggtgtgattccagcctccctgccaggca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)