BAC Information

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BAC

Clone NameMSMg01-109D19
Chromosome15 (Build37)
Map Location 62,393,899 - 62,394,144
singlet/doubletsinglet
Overlap genenone
Upstream geneMyc, Pvt1, LOC100040584, H2afy3
Downstream geneLOC100040430, Tsg101-ps, EG239502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D19.T7 (MSMg01no109_d19.b1)MSMg01-109D19.TJ (MSMg01no109_d19.g1)
ACCAG322473AG322474
length734741
length of high quality
(start - end)
---244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no109_d19.b1 PHD_FILE: MSMg01no109_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:23 2005CHROMAT_FILE: MSMg01no109_d19.g1 PHD_FILE: MSMg01no109_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTATTTGCGNCGTNNTCNCTCNNTTTCCCAAGANCCGCGNNNNNCCN
CTTCCCCTCCNNNTGNNNANAACACTTGAAAAATGTCAAAAAATAAGATC
TGGGAGATGGGGGGGGGGGGGGGGAGGGGGTGGGGGGGGGAAGGAGGGCG
GAGAGAATGGTGAGAAGAAGAAATGAAGAGAAAACGAGGTGAAGGGGGTG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGAAGGAAAAGAGAAG
AAAGGAAAGAGAAGAGGTGAAGGGGGAAGGAAAAAGAAAAAAGGANNNNC
CCTNNNNNNNNNNNNNNNNTTTTTCTCCCNNNNNNNNCNCCCCCCCCCCC
CCCCCACGCATTTCCTTTTTTTTTTNNNNNNNNNNNNTNNNNNNNNTNNN
NNTTCTCCCCTCCNTTTTTNTTNTCNNCCCGCGGCCCCCGGAAAGAAGGA
GGNCTTTTTNNNNNNNCTCNACNNCCCNCACCTACCCACCCGACCCCATA
CCCNNNTCCACCGNCGNNTNNNNNCCTACCACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNTTTCNNCT
CTTCTTNTTTTTTTTTTTTTNNTTTTTTTTNNTNTTTNTTTTTNTTTTTT
TNNNTNNTTTTTTTTCCGACCCACACAACCCCCC
AAACGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGTATCCATCTTTAATCTCG
GCGCACCGCAGTTAGAAGCGCTTACACTAGATACTGACGTAGGCAGCAGT
GGACCACAGATATGTTGACAAGGATCAGCATCTAAGGATATCCTCTGGTC
TCTACACATGCATTCATGTGCCTAGCACAACATACAAACAAACTGTTCTG
GTTACATTTTATCGTCTTTTTTTTTCAACTTGACACACGATACTCAACCT
GAAACAAGGAACCACAATTGATGAATTGTCTTGGTCAAATTGCCCCGTGG
ACATGTCAGTGGTTTTTGTCATGCGCCCCCAACTTACTTGATTAATCGGC
GGCCTGATATAGTCCAGCCCATTGCAGACAATGCCTTCCTTGGTCAGATT
GGCCTGCATTTTTATTATTTACCCACGATAGTAACGCAAAGAAATTCCTT
ATGTAAAATCGTATTCCCCAATTGCTCAATATTTCACTACTCCTCTCCTA
AACTCCTGACATGAATTTAGTTTTAGAATAAACACCATTGCTGGATTGTA
TAAATAAATTACCAAATAATTTAAATTATTATTCTCTATATAATTATTTT
ATATAATAAAATTTTTTCTATATTTTTGTTTTTTATATATAATCATAATT
ATTAATTACGACTACCCTTTCACTTCTTATATAATAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d19.g1 MSMg01no109_d19.g1 CHROMAT_FILE:
MSMg01no109_d19.g1 PHD_FILE: MSMg01no109_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:23 2005
         (244 letters)



>mm_chr15_62393699_62394345
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 242/246 (98%), Gaps = 3/246 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtatccatctttaatctcggcgcaccgcagttagaagcgcttacactagatactgac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gtggtatccatctttaatctcggcgcaccgcagttagaagcgcttagactagatactgac 260

                                                                       
Query: 61  gtaggcagcagtggaccacagatatgttgacaaggatcagcatctaaggatatcctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggcagcagtggaccacagatatgttgacaaggatcagcatctaaggatatcctctgg 320

                                                                       
Query: 121 tctctacacatgcattcatgtgcctagcacaacatacaaacaaactgttctggttacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctacacatgcattcatgtgcctagcacaacatacaaacaaactgttctggttacatt 380

                                                                       
Query: 181 ttatcgtc---tttttttttcaacttgacacacgatactcaacctgaaacaaggaaccac 237
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcgtcatttttttttttcaacttgacacacgatactcaacctgaaacaaggaaccac 440

                 
Query: 238 aattga 243
           ||||||
Sbjct: 441 aattga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space:   149930
Effective search space used:   149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)