BAC Information

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BAC

Clone NameMSMg01-109E16
Chromosome15 (Build37)
Map Location 12,332,330 - 12,332,775
singlet/doubletsinglet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109E16.T7 (MSMg01no109_e16.b1)MSMg01-109E16.TJ (MSMg01no109_e16.g1)
ACCAG322515AG322516
length712946
length of high quality
(start - end)
452 (91 - 542)---
definitionCHROMAT_FILE: MSMg01no109_e16.b1 PHD_FILE: MSMg01no109_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:27 2005CHROMAT_FILE: MSMg01no109_e16.g1 PHD_FILE: MSMg01no109_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCCCTTTTCGGCCTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAAAGAGGATCCGCGGAATTCACTTTGTTATCCCAGCAAGCTCT
GATCCTCCTGACCCAGCCTGTCAAAAGCTGAGATGCAGGTGTGCCCTACC
AAAGCCAGCCCCACGGTTGTTTTTTATCAAATATTGATTATAGAATTATT
GCTGAAGAATATGGGTTTTTTTTCAATTTGTATTTGTTAACTTATTTAGG
GAACATTCCAAGGGGCTAAGTCACTTTAAATGGGTCCAAATCATAAAGCT
TATATTTTGGCAGTGGCAGTCCAGGGACTGTAGAGTGTGCACGCCAGGAA
GAGTCTGGTAAATCAAAGCTTAACATACTTCTCGTGTTTGGCCACCAGGA
GATGAAATCCTAGATGTGAATGGAATACCAATAAAGGGTTTGACGTTTCA
AGAGGCTATTCACACCTTCAAGGTAACATGTCCCTGCGGATCTCACTAAG
TCTCGCTCTTGTCCCCTTTGGGGCCCCGCCTGCCTCCTCACTGTAGGAGC
CACCTGACCGTGCCCACCTACCCACCTACTTGTTTTGCAGCAAATCCGAA
GCGGGCTGTTCGTCCTCACGGTGCGGACTAAGCTGCTCAGCCCCAGCCTC
ACACCCTGCTCCTCACCCACACACATGAACAGATCTAGCTCCCCGAGCTT
CAACCGCAGTGG
GACCACACAATGATAGTGGGTAGGCCTGGGAGGTCGCCGGGTGCGNTATC
CTGTAGNGNGANACNANNAGAATTACCTGNCACCACTCAGANACAAGAAG
GAGAAAGAAGAAGACATGGAAGGACAGACGGAGCGGAAAGCTCGCGACCG
AAACATTAGCTAGCAACCCTTCACACGTTCAAACAAAAATAACTTTAGGC
AGTGAAGCAGTCGATTCGCTCGACATCTAGTAGATAATCGTCTAGACTAC
GCGGACAGAGATCATTTCACTCAGTTCCTTTATAGTAGTTTCTCATTGTA
TTCAGCCTTTCGCCACTTTTGCAACGGAGATAAATTTCTATGGTTATTTA
CCCGGTACGGAATACCAGAATAACAGTGTTATTTTTTTTTATGACAGAAA
GACCGGGAACCCACCCACCAGGAGCCAAGACTGAACGGTGGCCCTCCCCC
CCGCGCCACAGAGCGCAGCCCAAGAAGACCACACAGCGCCGCCACACACA
CCCACAGACCATACCCCACCTCCACAACAGAGCACCCACAACACCGACAC
ATTCCGCCGGCATAGTATGTAACGCACGTCATCCGCCTGAAAATCATGAT
AATTTTTCTTCTAACTCCTACTATATATATTTGATGCTCTATCCGAATCT
CTTTGAAATAGCGCTGTCTTTGCTGGTATCTCAATAATAATGAATATCGT
CTGCATATCAACAATAATATCTCGTGCTCTACTAAATATACGAATTTATA
TCGGCCTGCTTCCTATCTAATGTTTATGGCCTCCCACACGTCCTCTGTTC
GTTCTTTCTTTGTAATTGGTCTTCTATATTTCTAACCACCAGTGTATATC
CTCAGATCATTCTTTCATCTTTTCTTTTATTAGATTAAACACTTAGGCAT
CCTGCCAACATCAGTATTACTTTCTCTCATATCATTTTACACTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_e16.b1 MSMg01no109_e16.b1 CHROMAT_FILE:
MSMg01no109_e16.b1 PHD_FILE: MSMg01no109_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:27 2005
         (452 letters)



>mm_chr15_12332130_12332981
          Length = 852

 Score =  803 bits (415), Expect = 0.0
 Identities = 439/447 (98%), Gaps = 2/447 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaagctctgatcctcctgacccagcctgtcaaaagctgagatgcaggtgtgccctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agcaagctctgatcctcctgacccagcctgtcaaaagctgagatgcaggtgtgccctacc 587

                                                                       
Query: 61  aaagccagccccacggttgttttttatcaaatattgattatagaattattgctgaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aaagccagccccacggttgttttttatcaaatattgattatagaattattgctgaagaat 527

                                                                       
Query: 121 atggg-ttttttttcaatttgtatttgttaacttatttagggaacattccaaggggctaa 179
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 526 atgggtttttttttcaatttgtatttattaacttatttagggaacattccaaggggctaa 467

                                                                       
Query: 180 gtcactttaaatgggtccaaatcataaagcttatattttggcagtggcagtccagggact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtcactttaaatgggtccaaatcataaagcttatattttggcagtggcagtccagggact 407

                                                                       
Query: 240 gtagagtgtgcacgccaggaagagtctggtaaatcaaagcttaacatacttctcgtgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtagagtgtgcacgccaggaagagtctggtaaatcaaagcttaacatacttctcgtgttt 347

                                                                       
Query: 300 ggccaccaggagatgaaatcctagatgtgaatggaataccaataaagggtttgacgtttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggccaccaggagatgaaatcctagatgtgaatggaataccaataaagggtttgacgtttc 287

                                                                       
Query: 360 aagaggctattcacaccttcaaggtaacatgtccctgcggatctcactaagtctcgctct 419
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 286 aagaggctattcacaccttcaaggtaacatgttcctgcggatctcactaagtctcgctct 227

                                      
Query: 420 tgtcccctttggggccccgcctgcctc 446
             |||||||||||| ||| ||| ||||
Sbjct: 226 catcccctttggggtcccacct-cctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)