BAC Information

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BAC

Clone NameMSMg01-109I15
Chromosome15 (Build37)
Map Location 91,996,700 - 92,152,387
singlet/doubletdoublet
Overlap geneCntn1
Upstream geneAbcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529
Downstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I15.T7 (MSMg01no109_i15.b1)MSMg01-109I15.TJ (MSMg01no109_i15.g1)
ACCAG322699AG322700
length707714
length of high quality
(start - end)
240 (89 - 328)170 (84 - 253)
definitionCHROMAT_FILE: MSMg01no109_i15.b1 PHD_FILE: MSMg01no109_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:48 2005CHROMAT_FILE: MSMg01no109_i15.g1 PHD_FILE: MSMg01no109_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,152,152 - 92,152,387)(91,996,700 - 91,996,869)
sequence
CTATCGTATAANACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXATTTC
GTACCGAGGCGNGGAANNCAGNTTTTCCCAAAACAAACCACTGGGCTCCN
CTTTCCAGAGCATGGCAGGAGGTTGAGACTGTGGCCAGGCTATTCACATC
ACTGCTCTTCCTGTAGCTGTATCCTCCTCCCGCAAGTCTCCGCATCCTCA
CAATGCAGTAGTCACAATGGTGGTCTTCTGATCGTGGACTTTGCCTACCC
ACCCCCTTTGCTAACAACCAATCTTGTCCTGTAACTTTGCTTGAATTTGT
TTGTTAGCTTATTCTTTTCCTCCCTTTTATCTTTAGGGCTCTCCATCGTT
CTAACGGATGGGAAGGTTTATTGTCCCACCCCCGACCCGTGACTAACGCT
CAGAGCTACTAATTTATTTATCAGTACACCATTCATCGCACTACAGAACC
TAAGCAGTACAAGTGTCTGTTATTTGCATGGTGTAATACTATGCTGTCAT
TCCAGAGACTTACGCTGGACCTCATAATCATTACCCCATCCAACTTCAAC
AAAATGTTTTAGTTGAGTCCTTCTCAGAATATTATCATTACTCTTACTTC
CTGCTCTGACAATTCATCTCATTCTAATCAACTCTCACCCACGCCCTGCC
GAAGTTCTATTTTTTTTTTCAAAAAAAATACTGACACTTTATCCTTTAAC
TTCCTTG
TCTATCTTNTTTCTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTACCAGCGAAATTCAAATGCTAAATGT
GCATTGGATCTTCTAAGAGGGTGAATAGTAAGCTGTTATTGTGATTGCAC
TGGCCCTTTAAGAAATGAGTGTTTGGTAAGCTTATGTGTAACACTTGCCA
TGATTTTGGTTATGAATAGGTCGCAAAGATGTTCCTCGTGCTGGCAGATG
GAAGGGCAGCAATATAGGTGGCTGGTAGGAAAGCCGGAGGCGGAGTTGTG
CTAGAAAGAACATAGCAAATTCAACAGATGTTTTATGATAGACCAGTTGG
CAAATAGAGGTGCTACAGGATAACAGGTAAACCCCAGCGAAGACGTGTAT
GGATAGGCATCCAGTAGTGGGTTAACCGCCCCAGTAATATAAGATATAGA
ACAGTACAGGTTTCCCAAAGCTTATGAACATTTAGATTACCATCATAGAC
TACTACAAAATTCCTCTGTATCTGACCTTGGTAAAATATCTTCCTTTAAA
ATGTCTTTTATTATAACCTTTCAAAGACGCTCTTAACTGATTATATATCT
CATATTACGGAAAACCTTTCTTGTAAATCTTAAAGACTCTTACCATGGCC
CGATGTGCTCTTTGTTAACAATCCACAACGACCATGTTTGTTAAAGTTAC
TCTTATCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i15.b1 MSMg01no109_i15.b1 CHROMAT_FILE:
MSMg01no109_i15.b1 PHD_FILE: MSMg01no109_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:48 2005
         (240 letters)



>mm_chr15_92151952_92152591
          Length = 640

 Score =  420 bits (217), Expect = e-122
 Identities = 231/236 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgggctccnctttccagagcatggcaggaggttgagactgtggccaggctattcaca 60
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 436 cactgggctcctctttccagagcatggcaggaggctgagactgtggccaggctattcaca 377

                                                                       
Query: 61  tcactgctcttcctgtagctgtatcctcctcccgcaagtctccgcatcctcacaatgcag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 tcactgctcttcctgtagctgtatcctcctcccgcaagtctctgcatcctcacaatgcag 317

                                                                       
Query: 121 tagtcacaatggtggtcttctgatcgtggactttgcctacccaccccctttgctaacaac 180
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 316 tagtcacaatggtggtcttatgatcgtggacattgcctacccaccccctttgctaacaac 257

                                                                   
Query: 181 caatcttgtcctgtaactttgcttgaatttgtttgttagcttattcttttcctccc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caatcttgtcctgtaactttgcttgaatttgtttgttagcttattcttttcctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_i15.g1 MSMg01no109_i15.g1 CHROMAT_FILE:
MSMg01no109_i15.g1 PHD_FILE: MSMg01no109_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:48 2005
         (170 letters)



>mm_chr15_91996500_91997069
          Length = 570

 Score =  282 bits (146), Expect = 6e-81
 Identities = 164/170 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaaatgctaaatgtgcattggatcttctaagagggtgaatagtaagctgttattgtg 60
           |||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct: 201 attcaaatgccaaatgtgcatttgatcttttaagagggtgaatagtaagttgttattgtg 260

                                                                       
Query: 61  attgcactggccctttaagaaatgagtgtttggtaagcttatgtgtaacacttgccatga 120
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 attgcgctggccctttaagaaatgagtgtttggtaagtttatgtgtaacacttgccatga 320

                                                             
Query: 121 ttttggttatgaataggtcgcaaagatgttcctcgtgctggcagatggaa 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttggttatgaataggtcgcaaagatgttcctcgtgctggcagatggaa 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)