BAC Information

Click to search

BAC

Clone NameMSMg01-110B08
Chromosome15 (Build37)
Map Location 42,097,782 - 42,098,415
singlet/doubletsinglet
Overlap genenone
Upstream geneOxr1, Abra, EG432946, LOC432947
Downstream geneLOC100039268, LOC100039197, Angpt1, Rspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110B08.T7 (MSMg01no110_b08.b1)MSMg01-110B08.TJ (MSMg01no110_b08.g1)
ACCAG323099AG323100
length711705
length of high quality
(start - end)
541 (44 - 584)633 (73 - 705)
definitionCHROMAT_FILE: MSMg01no110_b08.b1 PHD_FILE: MSMg01no110_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:32 2005CHROMAT_FILE: MSMg01no110_b08.g1 PHD_FILE: MSMg01no110_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTCCCTCCCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAAATCGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAAGAGGAATTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTGAAAATTCCACCAGAGAACTCCTAAACCTGA
TAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAATCA
ATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTTTCTTTTTTTATCTTTCCATTTTTTATTAGGTATTTAG
CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCATC
CCCATTCCCCTACCCGCCCACTCCCCCTTTTTGGACCTGGCGTTCCCCTG
TTCTGGGGCATGTAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGA
TGGTCGACTAGGCCATCCTTTGATTACATATGCGGCTAGAGTCCAGAGCT
TCAGAGTACTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGGCTGTCTTCATGTGATAGGAACTC
CAGAGAGAAACTTCAAATGTGCAATTTTAATGTTTTATTTGGTAACTTGA
CCCTGTCGTTAATCACCTGGAAAGACAATTTGAATGAGAAATTGTGTAGC
TTATGTCAATATGTAGGCATGCCTGAAAAATATACCCTGATTCAGTGAGC
TAAGGTGTGTCTGTGGCAAGGGCAGCAAAAGACATTGGTAAAAGGGTGTA
TCAGAACATGATGCAGATAACATGGACCAGCAGAAAGATGTTGAGGCCAA
TAATTCCCTTAAGGGCAGACCATCATTGACCTAAGGAATCCCACTAGGAT
CTGCTTTATATATGGGTCCATAGAAACTCCCAATTCTTTGAGTATAAAAT
GTTTGGTTGAAAGATGTTATGGAAAACAGTATCCCTGGTTTGCATTCGGG
AAAATAAGGGTGCAAAATGGGTGGGTCACGAGCATGTACACTTTCTGTTC
TTGACTGTGGGTGTGACCAGCTGTTTCAGCCTCCTGCCACCTTGCCACCT
TAACTCCCTAAGAATAATAGACTAATACATGGCTTTGTGAGCTAAAAATT
AACATTTTGTCCCTGTACTGGCTGGTTTTCTGTGTCAACTTGACACAAGC
TGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_b08.g1 MSMg01no110_b08.g1 CHROMAT_FILE:
MSMg01no110_b08.g1 PHD_FILE: MSMg01no110_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:32 2005
         (633 letters)



>mm_chr15_42097762_42098794
          Length = 1033

 Score = 1164 bits (602), Expect = 0.0
 Identities = 626/634 (98%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggctgtcttcatgtgataggaactccagagagaaacttcaaatgtgcaattttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agaggctgtcttcatgtgataggaactccagagagaaacttcaaatgtgcaattttaatg 595

                                                                       
Query: 61  ttttatttggtaacttgaccctgtcgttaatcacctggaaagacaatttgaatgagaaat 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttttatctggtaacttgaccctgtcgttaatcacctggaaagacaatttgaatgagaaat 535

                                                                       
Query: 121 tgtgtagcttatgtcaatatgtaggcatgcctgaaaaatataccctgattcagtgagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtgtagcttatgtcaatatgtaggcatgcctgaaaaatataccctgattcagtgagcta 475

                                                                       
Query: 181 aggtgtgtctgtggcaagggcagcaaaagacattggtaaaagggtgtatcagaacatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 474 aggtgtgtctgtggcaagggcagcaaaagacattggtaaaagggtgtatcataacatgat 415

                                                                       
Query: 241 gcagataacatggaccagcagaaagatgttgaggccaataattcccttaagggcagacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gcagataacatggaccagcagaaagatgttgaggccaataattcccttaagggcagacca 355

                                                                       
Query: 301 tcattgacctaaggaatcccactaggatctgctttatatatgggtccatagaaactccca 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 354 tcattgacctaaggaatcccactaggatctgctttatatatgggtccacagaaactccca 295

                                                                       
Query: 361 attctttgagtataaaatgtttggttgaaagatgttatggaaaacagtatccctggtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attctttgagtataaaatgtttggttgaaagatgttatggaaaacagtatccctggtttg 235

                                                                       
Query: 421 cattcgggaaaataagggtgcaaaatgggtgggtcacgagcatgtacactttctgttctt 480
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 234 ctttcgggaaaataagggtgcaaaatgggtgggtcacaagcatgtacactttctgttctt 175

                                                                       
Query: 481 gactgtgggtgtgaccagctgtttcagcctcctgccaccttgccaccttaactccctaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gactgtgggtgtgaccagctgtttcagcctcctgccaccttgccaccttaactccctaag 115

                                                                       
Query: 541 aataatagactaatacatggctttgtgagctaaaaattaaca-ttttgtccctgtactgg 599
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 114 aataatcgactaatacatggctttgtgagctaaaaattaacatttttgtccctgtactgg 55

                                             
Query: 600 ctggttttctgtgtcaacttgacacaagctggag 633
           ||||||||||||||||| ||||||||||||||||
Sbjct: 54  ctggttttctgtgtcaagttgacacaagctggag 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)