BAC Information

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BAC

Clone NameMSMg01-110H12
Chromosome15 (Build37)
Map Location 47,069,714 - 47,069,872
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110H12.T7 (MSMg01no110_h12.b1)MSMg01-110H12.TJ (MSMg01no110_h12.g1)
ACCAG323387AG323388
length748764
length of high quality
(start - end)
280 (42 - 321)233 (73 - 305)
definitionCHROMAT_FILE: MSMg01no110_h12.b1 PHD_FILE: MSMg01no110_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:04 2005CHROMAT_FILE: MSMg01no110_h12.g1 PHD_FILE: MSMg01no110_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTGCTGATTTAATTCCTGAATACTCTATGTAGTCAGGTTAGTTG
ATATTGTTGTTCTTCCTATGTGGTTGCATTCCTCTTCAGCTCCTTCAGTC
CTACCTTAATATAACATTGTGATCCCATTGTTCAGTCCGATGGTTGGCTG
CAATGATCAGCATCTGTATGGGTCAGGCTCTGGCAGAACCTCTCAGGGCA
CAGCTATACCAGGCTCCTGTCAACAAGTACTTCTTGGAATCAGCAATAGT
GTATGGGTTTGGTGTCTGCAGATGGGAAGGATTCCTAGGTGTCAAGGTCT
ATGGTTTTCCTTTCCTCCTCTCTCTGCTCCAATCATTTTCTCTGTTTTTC
CTTTAGGTATTAATAATTCTGCTTTTAAAATTTTTGAGAAGCTTAGTTTT
TTTCAATTTTTCATTATTTTTAACGCTCCGTCCGTTTGTCTTTTACTTTT
TTTCAGTCTTTTCTTTCCCTTCTTTTTTCCCTATTTCTCTTTTCTCCCCT
CCATTTATTTTCTCCATCTCTCCCCCTTTATGCCCCTTTTTTTTCTTCTC
CTACCCCTTATTCTTCTATATTTTTCTCACACCCCCGCCACTACTTACTT
ATTTATCTATCTCTCTTCTCTTATAATTATATTTTATATCATTCTCTTTT
GAATCTCCAAACCCCTTACCCCCCCTACATTATTTATTTTACTCATTC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTGATACCCAGGCCTACAAGTATTTA
AGTTTTAATCATATATATATATACATATATATATATGTATATATATATAT
ATATATATATATATATTTCCCCAGCCCTGAGTAGACTAAACAAATCCCAA
AGGGATCGTTTTATAACCTGGGTTGGTTCTGCACCTGGCCTGTACACATT
TAGAAATCCCTACAGGAGCTTTGAGTCCTTGACTGCCTTTTGAGCTTGCT
TTGTAACTCAATCCAGCTGAAACAGAGGATGGGTCCGTGGATTTTGCCAA
TATAAAATCAGACCTGACAACTACACTTTGAGCCTCCATTAGAAACCTTT
GTTTTGGCCCCATCTTTCTCTTGCCTGCTTGTACTTTTTTATTTCCAAAC
CCCTTTCCATGTCCCCAGTTCCTCATGACTGTTGCACATCTCCCTCCATA
CACATGTGCCCCCATGTTTCACCTCCATTTCTCCACTCACATTATATCAA
TATTTCACCCACTCCTAACTATCTACTCCCACCACCCTCCTTTATCTCTT
TCTCACATCCCCCCTTCCTCCCCCTCCTTCTCCCCCTGCTCTACTCACCC
ATTCCCTTTCCCATGTATCCACCCCCCTTTTTCCTTTCTTCCCCCCTCTC
CCCACCCCCCACCACATCTTCTTTTTTAATTATTCCTCACTTCTCCCCCT
CCCCTCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_h12.g1 MSMg01no110_h12.g1 CHROMAT_FILE:
MSMg01no110_h12.g1 PHD_FILE: MSMg01no110_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:04 2005
         (233 letters)



>mm_chr15_47069420_47070052
          Length = 633

 Score =  269 bits (139), Expect = 1e-76
 Identities = 154/159 (96%)
 Strand = Plus / Minus

                                                                       
Query: 75  atatatatatatatatatatttccccagccctgagtagactaaacaaatcccaaagggat 134
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 atatatatatatatttttttttccccagccctgagtagactaaacaaatcccaaagggat 394

                                                                       
Query: 135 cgttttataacctgggttggttctgcacctggcctgtacacatttagaaatccctacagg 194
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgttttataacctggcttggttctgcacctggcctgtacacatttagaaatccctacagg 334

                                                  
Query: 195 agctttgagtccttgactgccttttgagcttgctttgta 233
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 agctttgagtccttgactgccttctgagcttgctttgta 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)