BAC Information

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BAC

Clone NameMSMg01-111N13
Chromosome15 (Build37)
Map Location 29,240,506 - 29,241,107
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111N13.T7 (MSMg01no111_n13.b1)MSMg01-111N13.TJ (MSMg01no111_n13.g1)
ACCAG324412AG324413
length1,1631,174
length of high quality
(start - end)
649 (73 - 721)712 (81 - 792)
definitionCHROMAT_FILE: MSMg01no111_n13.b1 PHD_FILE: MSMg01no111_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:41 2005CHROMAT_FILE: MSMg01no111_n13.g1 PHD_FILE: MSMg01no111_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CTTAGAACAGGAACCTTTAGTCATGTGAGGCAGAGGAAGGAGAAGGAATG
GGGCAGCAGAATATGAGGGCAAGATCAGGTGTGGGAAGAGACAAGAGAGA
GGCCCAGAAAGCCAGGAGAATAAATGGAAATAGTTGCTGAGTGTTGAGAG
GTGGGGTGGGTAATCCATAGGGAGTTCCTGAGACCTGACTCGGGGAGACC
CCTGGAGTTCATGTGGGCAAATTTAGCAGGGATACTTAACAGTGGGGACA
TGGAACCTGGACAGGTTACCTCCTGTGGCCAGGCAGGGTCCCCAGTGGAG
GAATAAGGCTAACAATGTACCCATAAAACTTTGGATCCAAAATTTGTCCT
GTCTAAAAGAAAGGCAGTGACAAAGATGGAGCAAAGACTGAAGAAATAGC
TGCCCCAACTTGAGACCAATTCCATGCACAAGCACCCACTCTAGACACTA
TTCATGGTGCTCCATTGTGCTTACAGACAGGACCCTAGCATAACTGTCCT
CTGAGAGGCTCTACCCAGCAACTAACTGAAACAGATGCAGATACTCTCAG
CCAAACATTGGATGACTGGAGGGCCCTTTTGGAACAGCTGGGGGAAGGCC
TGAAGGCCTTAAAGGGGATGGGAACTCCATAGGAAGACCAACAATGTCAA
CTACCCTGGACCTCTGGGAGCTCTCAGAGACTGAGCCACCAATAAATGAG
CATACTGTGGCTAGACATAGACCCCAGGCACATAGGTAGCAGAGGGCTGC
CTTGTCCTGTCTCAATGAGAGAGGATGCCCCTAATCCCGCAAAGATTTGA
TGTGCCAGAGTGGGGAAATATCCCAGGGGTTCCTACCCTCTCAGAAGTGA
TGGGAATGGGGGATTTGGGAAAGACTCCTCTGAGGGGTCTGGGATAAGTA
CCCGTTTTGGGAATGGATTTATTTCATTTTATCTCAATTTTTTTTATTAA
TGGATATTATATGTTATTATCCTTTTCTCTCTTTATATTCCTTTTCCTCT
TGGTTTTTCTCTTTTCAGTACTCTAGATACCCCCCCCCTTATCTCCCTTG
TTTCTTCGCAAATCTCCCTGTCTTGTCCCCTTATAGACTCCCCTCTCTTT
ATATGGGTTTTGG
NNCCCAAGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTAAAGACATGTATGTATTTATCAAGCAGAA
ACAATTACCTTTGATCCTACACAGGAAACATAAATGAGAAATAAAACTTT
TAAATAAAATTAATATATAAAGACAGGAAGAAGCAAACTCATCTTCTAGC
CATAAAGCCAGTTAAGAAGTATGGAGGGAGGGACACTTAAAAACTTTATA
ATAACATTTGATTTTCAAATGAGATGATTGTTTGTTAATCACAGAACATC
AGTAAAATTATTCTTCATAAATTACTCAGTAAATCCTAAGGGAAGAAAGA
GTTCTTTTATGAAGAAGAAATCTGGCAGGCAACATCTCCATATCATGGTT
ACCAAGCATCAGAAATGGACAGAGCTGCCATCTGATGTGATACACTGAGG
ATGTTACACCTTCAAATATACTCTGTTTCTGCCAAAAATTCATTAACTGA
ACTTAGTTGTGATCAAATACGAGACAAACACAACTAAGCAACTAACTACA
AAAGCCATGGTCTTTTATCCTTCAAAAATATAGATTCTGGGAAAGGATGC
AAAGTAATCCAGGATGAAAAGAATGCTATTGACACATTGTGCACAGAGAA
ATGTTACACTCGTGTATTAGGATGTATTGCTGTTCAAGAGATTATCAAAG
CTACCGAATTTGAACATGGGTTGTGATGAGTTAGAGACCTTTCAACCTTG
TCATATTTCTGAACTTGACAATTGTGTTAAAGTTTCACAAAAAGAATGGC
TTTCCACTTTCATGGAATGCATATTAAATTATATATTGGGAGAGAGAAAC
AATCCTTTCAGATATTTTGACGTAGAATAAAGACCAAACCTTTAGATTTA
GACTGGTAGGATTTGTAAGAAAAACTGTTGAAAATGTGAAAGTTTAAGGA
TCCCAAACAAGGGTAACCAAGTTTTTTGCTGTAAATTTCCCTTAAATTTG
GGTACTTAATTCAAAATGAAAATCCAAAATACCCCCGGGGGCTTCCTTAA
AAAGGGTCTTAATGGTTTTTTTTAAACAAGGGCCTTTTTAACATCCTTGG
ATGGAAATTATCCTCCCTAATTAAATTTTATATTGTGGAATTCCCTTTAA
CCCCGGAAATGTTAAAGGGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_n13.g1 MSMg01no111_n13.g1 CHROMAT_FILE:
MSMg01no111_n13.g1 PHD_FILE: MSMg01no111_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:41 2005
         (712 letters)



>mm_chr15_29240506_29241617
          Length = 1112

 Score = 1112 bits (575), Expect = 0.0
 Identities = 596/603 (98%), Gaps = 2/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtatttatcaagcagaaacaattacctttgatcctacacaggaaacataaatgagaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 602 tatgtatttatcaagcagaaacaattacttttgatcctacacaggaaacataaatgagaa 543

                                                                       
Query: 61  ataaaacttttaaataaaattaatatataaagacaggaagaagcaaactcatcttctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataaaacttttaaataaaattaatatataaagacaggaagaagcaaactcatcttctagc 483

                                                                       
Query: 121 cataaagccagttaagaagtatggagggagggacacttaaaaactttataataacatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 cataaagccagttaagaagtatggagggagggacacttaaaaactttataatagcatttg 423

                                                                       
Query: 181 attttcaaatgagatgatt-gtttgttaatcacagaacatcagtaaaattattcttcata 239
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 422 attttcaaatgagatgattggttt-ttaatcacagaacatcagtaaaattattcttcata 364

                                                                       
Query: 240 aattactcagtaaatcctaagggaagaaagagttcttttatgaagaagaaatctggcagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aattactcagtaaatcctaagggaagaaagagttcttttatgaagaagaaatctggcagg 304

                                                                       
Query: 300 caacatctccatatcatggttaccaagcatcagaaatggacagagctgccatctgatgtg 359
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caacatctccatatcaaggttaccaagcatcagaaatggacagagctgccatctgatgtg 244

                                                                       
Query: 360 atacactgaggatgttacaccttcaaatatactctgtttctgccaaaaattcattaactg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 243 atacactgaggatgttacaccttcaaatatactctgtttctgccaaaaattcattaacta 184

                                                                       
Query: 420 aacttagttgtgatcaaatacgagacaaacacaactaagcaactaactacaaaagccatg 479
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aacttagttgtgatcaaataggagacaaacacaactaagcaactaactacaaaagccatg 124

                                                                       
Query: 480 gtcttttatccttcaaaaatatagattctgggaaaggatgcaaagtaatccaggatgaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtcttttatccttcaaaaatatagattctgggaaaggatgcaaagtaatccaggatgaaa 64

                                                                       
Query: 540 agaatgctattgacacattgtgcacagagaaatgttacactcgtgtattaggatgtattg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  agaatgctattgacacattgtgcacagagaaatgttacactcgtgtattaggatgtattg 4

              
Query: 600 ctg 602
           |||
Sbjct: 3   ctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)