BAC Information

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BAC

Clone NameMSMg01-112E07
Chromosome15 (Build37)
Map Location 24,412,914 - 24,413,201
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624863, LOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E07.T7 (MSMg01no112_e07.b1)MSMg01-112E07.TJ (MSMg01no112_e07.g1)
ACCAG324723AG324724
length760731
length of high quality
(start - end)
286 (74 - 359)325 (74 - 398)
definitionCHROMAT_FILE: MSMg01no112_e07.b1 PHD_FILE: MSMg01no112_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:23 2005CHROMAT_FILE: MSMg01no112_e07.g1 PHD_FILE: MSMg01no112_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGGTTCCCGCCACCAGGGACTGTGCAAATTTCTATTTTTCAT
AGAGTTTTGCATTTGGTAACCTCCACACTTTTATTATAACTTTGATGGAT
TGTTTGCTGTAGTTGTCTGTGACCTTGCTGTATGACTAAAGCACACTTGC
TTAAACACAGAAATCCTTATGTGGAGAGTAGAGTTATTTATATTTGACAT
AACTTTCTGGAGGTAATTTATAAACGCAGCTGAAAAGTATTAAGCCCATT
TTGGAAAAAAAAAAGACTGCATTTGAATATATGTGCAGTGTGCTTACACT
GGCAAGAATTCCTATTTAGTTTCAGTCTGCACTGTTTTAAAAATCAACGC
TTATGTTTCAGAATAACACCCCGCACAACACGAACATGAAAATGAACTAA
ATGCTTAATTATGTAACATATTACGCTGTACGACATCTCATTTCACATTC
AACAATATACACCAATTGTATTGTCTGAGTATAAATTTTATTTCCCCCCA
CAAGCTCTGGATGTTTCACTGTATCACCACCTCTTTTCCTCCTACCATTC
ACCTATCTCCCACTCTTTGATCATCTTCCACACATCCTCTAAACCTCACT
CTTACTTTATCTTCCCCCTTCTTTCTTTCTCCCCGCTCTCTTATTACTTA
CTTTTGCCGCTGCCCACGTGCTATTTTTTTTCCTCTTTTCTCTTTACCCT
CTCTCCCCCT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAGCTCCTTGTTTAGTGAGAGTCCC
TGCCTCAAAGAGTAGGATGAAAGGAATGACCATCCATAGACTGCCCAACC
TGGAGATCCATCCCATATACAACCACCAAACCCAGACACTATTGTGGATG
CCAACAAAAGCTTGCTGACAGGAGCGTGATATAGCTGTCTCCTGAGAGGC
TCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCATAGCCATTCATTG
GATGGAACACAGGATCCCTAATGAAAGAGCTAGAAAAAGTACCCAAGGAG
CTGAAGAGGTTTGCAACCCCATAAGAAGAACAAAATCCCAGCACTCGGTA
GGCACAGGCTTGCGGATTTCTGAGTCCGAGGCCAGCCTGGTCTACAAAGC
GAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAA
CCCTTCATAAACTATTCTCCTTACTACCCTCCCCCCCTACTAACCATAAT
ATGAATTACCCAGTAATCCCATAGCCCCCTGGTAGTAAACCCCCACTTAA
ATAAAAAATCTTGATTGCACTCATGGCTCCCTATTGCAAATGTATATTGT
ATATGCCTCCCGTTGCCTATGAATCCTAGTAACGGCTTACTTGGCCCTCT
TTCAAAAGCATAATGCCCCTCTGTCTTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e07.b1 MSMg01no112_e07.b1 CHROMAT_FILE:
MSMg01no112_e07.b1 PHD_FILE: MSMg01no112_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:23 2005
         (286 letters)



>mm_chr15_24412714_24413401
          Length = 688

 Score =  460 bits (238), Expect = e-134
 Identities = 276/290 (95%), Gaps = 6/290 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggactgtgcaaatttctatttttcatagagttttgcatttggtaacctccacactttta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct: 488 gggactgtgcaaatttctatttttcatagagttttgcatttggtaacct-gaaactttta 430

                                                                       
Query: 61  ttataactttgatggattgtttgctgtagttgtctgtgaccttgctgtatgactaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 429 ttataactttgatggattgtttgctgtagttgtctgtgaccttactgtatgactaaagta 370

                                                                       
Query: 121 cacttgcttaaacacagaaatccttatgtggagagtagagttatttatatttgacataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cacttgcttaaacacagaaatccttatgtggagagtagagttatttatatttgacataac 310

                                                                       
Query: 181 tttctggaggtaatttataaacgcagctgaaaagtattaagcccattttggaaa-aaaaa 239
           || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 309 ttcctggaggtaatttataaa-gcagctgaaaagtattaagcccattttggaaagaaaaa 251

                                                             
Query: 240 aaga---ctgcatttgaatatatgtgcagtgtgcttacactggcaagaat 286
           ||||   || || |||||||||||||||||||||||| ||||||||||||
Sbjct: 250 aagaagactccagttgaatatatgtgcagtgtgcttagactggcaagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 688
Length adjustment: 9
Effective length of query: 277
Effective length of database: 679
Effective search space:   188083
Effective search space used:   188083
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)