BAC Information

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BAC

Clone NameMSMg01-113J19
Chromosome15 (Build37)
Map Location 94,734,505 - 94,735,005
singlet/doubletsinglet
Overlap geneTmem117
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
Downstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113J19.T7 (MSMg01no113_j19.b1)MSMg01-113J19.TJ (MSMg01no113_j19.g1)
ACCAG325706AG325707
length696704
length of high quality
(start - end)
487 (70 - 556)501 (69 - 569)
definitionCHROMAT_FILE: MSMg01no113_j19.b1 PHD_FILE: MSMg01no113_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:05 2005CHROMAT_FILE: MSMg01no113_j19.g1 PHD_FILE: MSMg01no113_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAAATTTGCGGCGCTAAACGACTACTATTTTCGAACGAGCGCGGAATT
ATTGTGGGTGCCACAACAACTCCTGGGCATGGGGTCTAGCCTTAGGTGTG
GTTAATATTTTCATTGAGACACCATTGGAGAAGATTGATTTTTTTTACTT
TGCAATTGGTTATCAACTGGAGAGAGCTTCTTGCTTAGGAATGGGAACTC
ATGGTCTCTTCCCCTCTCAGCACTGGGACCCCATCTGGCTTGAACCTGTG
TAGGCCCCGTGCATGCTGCCGCAGTCTCTGTGAGTTCATAAATACATCAG
TCCTGTTATATCTGTAAGTGATTGTTTTCTAAGTGCTACTCATCTCCTCT
GGCTCTTACGGTCTTTCCTTCTCTTCAGTGTGGCTCCCTGAGCACTGAGG
GGAAAGATTTGCTGAAGACATCCCTGTCAGGGCCAAGTGTTCCAAGGTCT
CTCGCTCTGCACACTGTCAGTCTGCTGCAAAGGAAGCTTCGTTGATGATG
GCTGATTATAAATCATAATGTGAGGAACTTTTTATATTTAAATATTTTAT
GTGTATTCCTGTGGCCTGTGTGTGTGTGTGCACCATGTAAATGCCTGGTG
CCTGTTAGAGTCAGCAGAAAGTGTCTGTGGAAGTGGACTTGCAGATGGTT
GTGATTGTTGTGAGCCACAATATACAGGAGCTGGGAACTGATCCTG
GAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACCATTTACCAGAAAGTTGTGTATCCTTTCT
GCTTTGTTACCATTTTCTGTTTTGAAACGACATTCTGTGCATTGCAAACT
AAAGGGTGTCCCATAAGAAACCAGTAAGAACTCATAATGGACTTTTGTCA
GATACACCTCATTTATTTATTTTTAACCTGAGAGATGTTGCTGAAGAGAA
GTTTTTATAGCATGAGTGACAAGAAGGACTGGGCCACTTCACACGAGGAG
CCTGGTCCCTTTTTCTGAAAGACAGCGGTCCTTTGTACCCGGCTCTCTAT
CCCTAGCTCGTTCTTATATACTGAACTCTCTTATTCTTTCCCTACCTTGT
TTCATTAAATGGCTGAGACCCACATTTTAATTATCTTGAGGCCATTCTAA
AACATGGTCCCCTCTGCAGCAGGCATGCCACAGGATAGGACATGCCCTAC
AATGCAGAGAAGGAGATGGTATAGCCAAGTGAACGCGAAATATTTCATCT
CCATACACAGATCCTGTTAAAAGGGAAAATGTTCCCTTTGGTTCTGATGC
ACCAGCGTCCACTCAAATGCTGAAAGCAAGATGCCTGCCAAATTTCCCTG
AACTCTAGGTTGACTTCCCTGAACTGCCTTCCTTCGTCTCATGAGTAAGG
ATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_j19.g1 MSMg01no113_j19.g1 CHROMAT_FILE:
MSMg01no113_j19.g1 PHD_FILE: MSMg01no113_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:06 2005
         (501 letters)



>mm_chr15_94734305_94735205
          Length = 901

 Score =  899 bits (465), Expect = 0.0
 Identities = 492/501 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccatttaccagaaagttgtgtatcctttctgctttgttaccattttctgttttgaaac 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 caccatttaccagaaagttgtgtatcgtttctgctttgttaccattttctgttttgaaac 642

                                                                       
Query: 61  gacattctgtgcattgcaaactaaagggtgtcccataagaaaccagtaagaactcataat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 641 gacattctgtgcattgcaaactaaagggtgtcccataagaaacaagtaagaactcataat 582

                                                                       
Query: 121 ggacttttgtcagatacacctcatttatttatttttaacctgagagatgttgctgaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggacttttgtcagatacacctcatttatttatttttaacctgagagatgttgctgaagag 522

                                                                       
Query: 181 aagtttttatagcatgagtgacaagaaggactgggccacttcacacgaggagcctggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 521 aagtttttatagcatgagtgacaagaaggactgggccacttcacatgaggagcctggtcc 462

                                                                       
Query: 241 ctttttctgaaagacagcggtcctttgtacccggctctctatccctagctcgttcttata 300
           ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 ctttttctgtaagacagctgtcctttgtacccggccctctatccctagctcgttcttata 402

                                                                       
Query: 301 tactgaactctcttattctttccctaccttgtttcattaaatggctgagacccacatttt 360
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tactgaactctcttatcctctccctaccttgtttcattaaatggctgagacccacatttt 342

                                                                       
Query: 361 aattatcttgaggccattctaaaacatggtcccctctgcagcaggcatgccacaggatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aattatcttgaggccattctaaaacatggtcccctctgcagcaggcatgccacaggatag 282

                                                                       
Query: 421 gacatgccctacaatgcagagaaggagatggtatagccaagtgaacgcgaaatatttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 281 gacatgccctacaatgcagagaaggagatggtatagccaagtgaacgcgaaatatttaat 222

                                
Query: 481 ctccatacacagatcctgtta 501
           |||||||||||||||||||||
Sbjct: 221 ctccatacacagatcctgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)