BAC Information

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BAC

Clone NameMSMg01-115G06
Chromosome15 (Build37)
Map Location 64,568,851 - 64,569,212
singlet/doubletsinglet
Overlap geneAdcy8
Upstream geneLOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115G06.T7 (MSMg01no115_g06.b1)MSMg01-115G06.TJ (MSMg01no115_g06.g1)
ACCAG327032AG327033
length729721
length of high quality
(start - end)
366 (44 - 409)633 (80 - 712)
definitionCHROMAT_FILE: MSMg01no115_g06.b1 PHD_FILE: MSMg01no115_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:20 2005CHROMAT_FILE: MSMg01no115_g06.g1 PHD_FILE: MSMg01no115_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGAAGACAGGTGGACAGCAAAACCAGGAGAGGGACCTCAGAGGTTC
CTGTGAGTCTGACCACCTTTGTTCTCTGTTTGCAGTACTTTGTCTTCACT
GGGGTGTTGGCCATGGTGACCTGTGCTGTGTTTCTACGGCTTAACTCTGT
CCTGAAGCTGGCAGTGCTACTCATCATGATCGCCATCTACGCCCTGCTCA
CAGAGACCATCTACGCAGGTCTCTTTCTGAGTTATGACAACCTGAACCAC
AGTGGAGAGTAAGTACCCACCACAGTGCTAATGTGCTCAGCTGTCACGGA
AATGAAGGCACTGGGCAAGTAATAGCATTAGGGAAACTGAGGGATTGGCT
TTTTATGAACACACCCCCAGCTCAAACACTGTCCGGTTTACACATCAAGG
GGAAAATCTCTAATTTTCAACATATATGAACTATAGACTAATAATAATAA
TTATTTAAAACTTACACTAACCTGGGTGCGGTACCTTAGATTTCCTCCCC
ACCTAATAATTAATTTTCTTAACACTAGCAATTCTGAGGCCTGCGGGATC
TAGCTTTAATTTAACTATAGCAATATTGGTCATACTCAGTCACTGTGGAT
TGAGCAACGCTGATCCTTCCTTATTATCTCTAACATTTAGACTAATGTCA
GAAGTATCGCTCTACCCAAGATCCCTTTG
NNNNTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAATCCTCATCAGAATT
CCAGCACAATTCTTCACAGAAACTAAAAGGACAATTTTCAGCTTTTGGTG
TTTCAGTGGACGGCACACACACACACACACACACACACACACACACACAC
ACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAA
ACAGCATGGTTTTGGCACAAAATAGATATAATAGTCAATGGAATCTAATT
GAAAACTCACACATAGGTCCACATACCTGCAGACACTCGATTTTTGATAA
AGAAACAAGAAATACACACTAAAAAAAATGATAGTATCTTCAACAAATGG
TGCTGGTCAAACTGGATAGTTGAGTGCACAAAAATGCAAACAGATATATT
CTTCTCACTCTGCCTAAAACATAACTGCAAATGGATCAAAGACTTTAATA
TGAGTCCAGATATACTGAATTTTATAGGAGAGAAAGTGGGGAAATAGCCT
TGAACTCATTGACACAGAAAGACTTTCTGAACTGAGCACCCATTTCACAG
GCACCAAAATCAACAATTAATAAATAGAACCTAATGTAACTGAAAAGCTT
CTGTATGGCAAAATACATCAGCTGGACAAAGAAGTAGTCTACAGAATGGG
AAAAGATTTTTTATCAAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_g06.b1 MSMg01no115_g06.b1 CHROMAT_FILE:
MSMg01no115_g06.b1 PHD_FILE: MSMg01no115_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:20 2005
         (366 letters)



>mm_chr15_64568647_64569412
          Length = 766

 Score =  700 bits (362), Expect = 0.0
 Identities = 362/362 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaagacaggtggacagcaaaaccaggagagggacctcagaggttcctgtgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattcctgaagacaggtggacagcaaaaccaggagagggacctcagaggttcctgtgag 507

                                                                       
Query: 65  tctgaccacctttgttctctgtttgcagtactttgtcttcactggggtgttggccatggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctgaccacctttgttctctgtttgcagtactttgtcttcactggggtgttggccatggt 447

                                                                       
Query: 125 gacctgtgctgtgtttctacggcttaactctgtcctgaagctggcagtgctactcatcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gacctgtgctgtgtttctacggcttaactctgtcctgaagctggcagtgctactcatcat 387

                                                                       
Query: 185 gatcgccatctacgccctgctcacagagaccatctacgcaggtctctttctgagttatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gatcgccatctacgccctgctcacagagaccatctacgcaggtctctttctgagttatga 327

                                                                       
Query: 245 caacctgaaccacagtggagagtaagtacccaccacagtgctaatgtgctcagctgtcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caacctgaaccacagtggagagtaagtacccaccacagtgctaatgtgctcagctgtcac 267

                                                                       
Query: 305 ggaaatgaaggcactgggcaagtaatagcattagggaaactgagggattggctttttatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggaaatgaaggcactgggcaagtaatagcattagggaaactgagggattggctttttatg 207

             
Query: 365 aa 366
           ||
Sbjct: 206 aa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)