BAC Information

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BAC

Clone NameMSMg01-120B05
Chromosome15 (Build37)
Map Location 16,402,262 - 16,402,625
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B05.T7 (MSMg01no120_b05.b1)MSMg01-120B05.TJ (MSMg01no120_b05.g1)
ACCAG330533AG330534
length707703
length of high quality
(start - end)
626 (47 - 672)508 (78 - 585)
definitionCHROMAT_FILE: MSMg01no120_b05.b1 PHD_FILE: MSMg01no120_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:24 2005CHROMAT_FILE: MSMg01no120_b05.g1 PHD_FILE: MSMg01no120_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAAGAGGATCCG
CGGAATTCTTTGTTCACTTCTGAGACCCATTTTTTAATGGGGTTGTTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCT
TTTATCG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGTAGACTGGAAACCAGCAG
CTCCCTAAGAATCAAGCTGATATGCAGCACCTGATGAAACTGCAGAGAGA
CAACCTACTCGTTTGTCTGTACTTAATTACCAGATATATTTCCATTGTGA
GGACAGCTGTTGTGACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAT
GTATGATGTATGAGTTTCTTGTGCCCACTTCTCCCTAATGGTATTCAGGC
CCATTGTGTACCAAGCTAGACTAGAGGGACAGAAGTAGAGGAGCTGAGTA
CAGATAAGTACAGTGCAGGATCTCTGTTGGAAATGAGTGCTCAGACAGCA
CATCTGGACAGCACACCTGGGAACAGCTTCAGAAAACAGGTTTCATTTAC
ATAGGGAGAAAAGGGGGGCATTTATGTGCCCACGGATGTGGCCAATGTCT
TTGGAGTAAGGCTTGTGTCCACATGTACCATTAGGCAGGGCAAGGATGTT
GGAAGATGCTACAACTACATACTCAGGGCATATGTTGGGGGGGGGGGGCG
GTGAGGGAAAACCTTTACAACACAAACAAGGAGTGAAGCCTGATTTCTTT
GCCGGCAATAAATTGCTGCTACGATCGACGGCGCTTAGATACCTGACTTT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b05.g1 MSMg01no120_b05.g1 CHROMAT_FILE:
MSMg01no120_b05.g1 PHD_FILE: MSMg01no120_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:24 2005
         (508 letters)



>mm_chr15_16401748_16402655
          Length = 908

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%), Gaps = 2/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 142 tgtgtgtgtgtgtgtgtgtgtgtgtgttttatgtatgatgtatgagtttcttgtgcccac 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tgtgtgtgtgtgtgtgtgtgtgtgtgttttatgtatgatgtatgagtttcttgtgcccac 819

                                                                       
Query: 202 ttctccctaatggtattcaggcccattgtgtaccaagctagactagagggacagaagtag 261
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 818 ttctccctaatggtatccaggcccattgtgtaccaagctagactagagggacagaagcag 759

                                                                       
Query: 262 aggagctgagtacagataagtacagtgcaggatctctgttggaaatgagtgctcagacag 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aggagctgagtacagataagtacagtgcaggatctctgttggaaatgagtgctcagacag 699

                                                                       
Query: 322 cacatctggacagcacacctgggaacagcttcagaaaacaggtttcatttacatagggag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cacatctggacagcacacctgggaacagcttcagaaaacaggtttcatttacatagggag 639

                                                                       
Query: 382 aaaaggggggcatttatgtgcccacggatgtgg-ccaatgtctttggagtaaggcttgtg 440
           |||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 638 aaaaggggggcatttatgtgcccagggatgtggtcc-atatctttggagtaaggcttgtg 580

                                                                       
Query: 441 tccacatgtaccattaggcagggcaaggatgttggaagatgctacaactacatactcagg 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tccacatgtaccattaggcagggcaaggatgttggaagatgctacaactacatactcagg 520

                
Query: 501 gcata 505
           |||||
Sbjct: 519 gcata 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)