BAC Information

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BAC

Clone NameMSMg01-120G02
Chromosome15 (Build37)
Map Location 79,642,788 - 79,643,030
singlet/doubletsinglet
Overlap geneNpcd
Upstream geneLOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Nptxr
Downstream geneCbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G02.T7 (MSMg01no120_g02.b1)MSMg01-120G02.TJ (MSMg01no120_g02.g1)
ACCAG330763AG330764
length700761
length of high quality
(start - end)
244 (48 - 291)---
definitionCHROMAT_FILE: MSMg01no120_g02.b1 PHD_FILE: MSMg01no120_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:47 2005CHROMAT_FILE: MSMg01no120_g02.g1 PHD_FILE: MSMg01no120_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACTTATCGGAGCGGAGGGGCGGAATTCCAGGTCATACGGAAAACATAG
TGATACCCTTTCTCAACAAAACAAAAGAGTATCTTTAGACACCCATGAAG
ACCTGTGCTAGACCATGGCAGGCACCAGTGGCTTCATTCTTGCTCAGTGG
CTACCTCTTTAGGCCAGTCAGTTTACCCATCTTTCCCACTGATGATTCAA
TCTCAATGTGTTCGGTGTCTTCTGGGTTTTACTAGATGGTCTCTACCTTC
TTTTGAGACAGGGGAGAAAGGGGGAGGGAGAGGAAGATGGTATTATGATT
TTAGACACNACCACACACCGCGGCGCGGTTTGTTATGTTCCCTCCCCCCC
TCCATGTCCACCTTCTGTAGAGTTTTTGTGTTAATCCCGTTCCCCCCCGC
GTGTTCACTAACCTCCTCTCTTTTAGATATCCGCTTTTCTCATCCCCATA
ATCCCCTATATTTACCCCTTTATTTTTTACTCTTCCTTCACACCCTTACC
TTTCTTTAAAACAACCCACCCCCCCCCTTTTTCTCCCCCCTATTTTAGAA
TTGCCCTCTTTATTCACATCCGCGCCCACCACCAAACCACTTTCACCATC
CGCGTCCCACAACAAATCGGGGCTTAACCTCTTCAATTTGCGATTTTTCC
CGCCTTTTTTCAGTGCTGTCTTTATTTTCTGTTCCCCAACCATTATTCTT

AAAAAAAAGGGAGGGGGGGAGGGGGGAGTAACATCCAGCCCGCTGCGTTC
TTGGTGCGATGATGTGGGAGGCCTGGNGGTGCTGGGTCTAACCCGNAGGN
GAANNANANANCTGCGNCAGGAGGGGGGGAGNNANAGNNGNGAANNANAA
GGNAGGAGGAGGGGAAAAAACCAGGANGNNGGAAAGAGGAGAAGAGGGAG
NGCGAAAAGGGAGGGAAAAAGGGGGGGAGGGGGGAGAGGGGAAGAAAAAG
GGAAGGGGGGAAAGGAACGGGGGANGAGAGGGGGGGAGAGGANGAAAAAN
GGAGATGGAAGGGGGGGGAAAAAAGGGAGGAAGGAAAGGAAAAGGAGGAG
AGGAAGAGAAGGAAGGTTTTTTTGTTTTGANAGAANAAAANNNAGGGAGA
AGNGGAAGGGANGAGCCGCGCACGGACCCAGACGGAAAGGAGCAGAAGAA
CGGCGGCCAGCGGCCCAAGCCGGGAATCAGGCGGGGCGAAGGAGCAGGGC
GAGGCACGGGCAGCGAGGGGGCGGACCAGACCCGCGGGGAGCGCCGAGAG
GCCCAGGCGCGCGCACCCGCCGCACGGCGCGGGGAAAAAAGACGGGCAGG
GCCGCAACGGGAACGCAGGAGGAGCGGGGCGAACACCAGGGGGGGAGACA
CACGAGAGGGGGGGGCGGCCGGAAGGGGACGGACGCGGGGAAGCGAGCGG
CACCGAAGAGCGGCGGATATTTTGTGAGGAAGGAGGAGGGGGGAGAATAG
GACCCGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g02.b1 MSMg01no120_g02.b1 CHROMAT_FILE:
MSMg01no120_g02.b1 PHD_FILE: MSMg01no120_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:47 2005
         (244 letters)



>mm_chr15_79642588_79643231
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgataccctttctcaacaaaacaaaagagtatctttagacacccatgaagacctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tagtgataccctttctcaacaaaacaaaagagtatctttagacacccatgaagacctgcg 260

                                                                       
Query: 61  ctagaccatggcaggcaccagtggcttcattcttgctcagtggctacctctttaggccag 120
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaccatggtaggcaccaatggcttcattcttgctcagtggctacctctttaggccag 320

                                                                       
Query: 121 tcagtttacccatctttcccactgatgattcaatctcaatgtgttcggtgtcttctgggt 180
           ||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||
Sbjct: 321 tcagtttacccatctttcccactgatgatgcaatctcaatgtgtttg-tgtcctctgggt 379

                                                                       
Query: 181 tttacta-gatggtctctaccttcttttgagacaggggagaaagggggagggagaggaag 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttactaagatggtctctaccttcttttgagacaggggagaaagggggagggagaggaag 439

               
Query: 240 atgg 243
           ||||
Sbjct: 440 atgg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)