BAC Information

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BAC

Clone NameMSMg01-121F17
Chromosome15 (Build37)
Map Location 98,629,646 - 98,629,926
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1
Downstream geneDdn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F17.T7 (MSMg01no121_f17.b1)MSMg01-121F17.TJ (MSMg01no121_f17.g1)
ACCAG331491AG331492
length712696
length of high quality
(start - end)
---280 (69 - 348)
definitionCHROMAT_FILE: MSMg01no121_f17.b1 PHD_FILE: MSMg01no121_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:06 2005CHROMAT_FILE: MSMg01no121_f17.g1 PHD_FILE: MSMg01no121_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGGCCCGCTAAACGACTACTATTTCGAGAGGATCCGCGGAATTCTT
ATGTATTACAACACCGCCGATGCTATCTTATGCGAACTCTTCGGCCCGGA
ATAACTGCCCTGTTTCTGCCGCAGACATTGTCTAACCCGCAGCAGTGGGG
CAGACCCTCAGGATATAACTGCTATGGTTGCCAACTATGTCCCCTGTCCT
CTGGGCACACAGTATGGCACTCTTATTTTTGCACACTCATCCCAGGTTCT
GGTAGCCTGGATGTTAATGTTTACAAAGGGGCAAGACGTCTCACGGACTC
TGGCTTCTAACTCCTTGGTTTTCTAAACCAACTTTTACAGTCTGTACAGT
ATGTATATTATGTCTTCGCGCCCCGATTACCCATGACCCATCCTCCCGGG
TAAGTTTTGCGTGTTGGCTCCGTAAAGGTGCTTCCCCCTCGCCCCTCACC
CCCCTCCATCCTCTTCCCCCCCCCCAAACCACCCTCCTCTCCCCTCTCTC
CACCCCCCCCACCCCCCTTTAATTCACCAACTCACAGATACCCCCGCTCC
TTAACCTCCTACTCCCATCCGTCCCAAAACTTATCCCCCCACCCCACCCC
CCTTCCCTCTCCTTCCCTTCCCCTCCACCCCCCCCCCCCCCCCTTATTTT
CACCTCTATATACATCACCTAGCGAACTCACACCCCCTCCTAATACTCTC
TACTTTTTCTCC
AAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGTGTGTGTGCTTGTGTGATGTGTGCGTGTG
TGTGTGTTTAACACACATAAAGAAGAGTAGAGTTGGATGAGACTTGATTT
TGAGATTCTTGATGGCAAAAATTATGTTTTGGGTCACTGTTATTTTTATA
AGATCCTAATACTTTACCTAGAATGCCAGGCTATATGAAGCCCGTACTTC
ACAACCGTTGCGGCCTGTCAGATCTTCTCTTAAATGTCTGTCCTCCGGCT
CTTCATTTACCTATTTCTTGGTCAAAAGAGATGTCTAGAGCATTCCTGTT
TTNCTGTGTCCCCCCCCCCCCCCTGACCAGATGAAGCACTAACGATCCTG
GTAGAACTCAGCGCCAAAGAACAAACAGCGCCGCCTCGTGGCAAATCTTG
AGAGAGCTTCTGGAGACTCTATCTAAGAGGATAGAGCCAGCGTCTGCCGG
TACTCAGGTTGGACCGTATCCATCCTCCTTCATGCTTGCGTCGTTGTCTT
CCCGGCCTTTATTTTAATTTGTCCCCCCATTATTTGAAGCCTTGTATCCT
GCCCTTCCCGACGTCCCCAATTTTCCCCCGCGCTGCCCATAACAAACAAA
CACCGCTCTTTTCGCCTGCACCCCCCTGACCGCCCCCCATTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f17.g1 MSMg01no121_f17.g1 CHROMAT_FILE:
MSMg01no121_f17.g1 PHD_FILE: MSMg01no121_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:06 2005
         (280 letters)



>mm_chr15_98629447_98630126
          Length = 680

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgtgtgtgcttgtgtgatgtgtgcgtgtgtgtgtgtttaacacac-ataaagaagag 59
           ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 200 ttgtgtgtgtgcttgtgtgatgtgtgcgtgtgtgtgtgtttaagatacaataaagaagag 259

                                                                       
Query: 60  tagagttggatgagacttgattttgagattcttgatggcaaaaattatgttttgggtcac 119
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagacttggatgagacttgattttgagattcttgatggcaaaaattatgttttgggtcac 319

                                                                       
Query: 120 tgttatttttataagatcctaatactttacctagaatgccaggctatatgaagcccgtac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttatttttataagatcctaatactttacctagaatgccaggctatatgaagcccgtac 379

                                                                       
Query: 180 ttcacaaccgttgcggcctgtcagatcttctcttaaatgtctgtcctccggctcttcatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcacaaccgttgcggcctgtcagatcttctcttaaatgtctgtcctccggctcttcatt 439

                                                    
Query: 240 tacctatttcttggtcaaaagagatgtctagagcattcctg 280
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 tacctagttcttggtcaaaagagatgtctagagcattcctg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)