BAC Information

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BAC

Clone NameMSMg01-121K18
Chromosome15 (Build37)
Map Location 65,096,578 - 65,096,728
singlet/doubletsinglet
Overlap genenone
Upstream geneDdef1, Adcy8, LOC268812, LOC100040790, LOC665836
Downstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121K18.T7 (MSMg01no121_k18.b1)MSMg01-121K18.TJ (MSMg01no121_k18.g1)
ACCAG331725AG331726
length767713
length of high quality
(start - end)
153 (148 - 300)531 (70 - 600)
definitionCHROMAT_FILE: MSMg01no121_k18.b1 PHD_FILE: MSMg01no121_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:31 2005CHROMAT_FILE: MSMg01no121_k18.g1 PHD_FILE: MSMg01no121_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACAGAAAANGTGACGGGGTGATTTTCCCGGGAACCGGAATGGGNAAAA
AATNNNGTAACTATAATTGCGGCGCTAATACGACTCCTATTTCGAGAGGA
CCGCGGAATTCTTAACTATGCCACTACCCTTCAATAAGAGTTGATCTGTA
AGTGAGTGGAAACGTGTGATAGAACAAAACACCACAGACTTCTCTATTCT
GTATTATTGCTGAGGCCATCTCATGTGTTGCTAGAATTTGATCTCCTTGA
TGGAGAAACCCATGGAAAATTATCCACTTCTATTCTGGGAGCCCAAGGTC
AGTAAAACCAAACTAAATTTCCTAGATTGAGTTAAACTGCTTGCTTGTGC
AAACCTCCCTTAGCAAATCTCCCTCTGCTGATTGAGATAACATAGTGTTC
TTTTTTATTACATTTTAATTTTCTCTTGCCCCCCACGCCCGCGGCTATAC
TTCAATCCTTGAATGCCTTACCGCCCCCCCAACTGTATGGAGTAAAGACT
TCTGGGTGGCTACCAACTGATTCAGAATATTAATCTCTGATAGGCTCCCT
GTAGGTAAAACACTCTAATTTCTCTATGCCCAGTTTTTTTTTCCTCTGTG
GGATGAATCCCATCCTGATTACTATTATGCTTTATTTCCCCAGCCCATAA
ATTTACATTGTGTTTAATCTGGGTTCTTTTAGGTTAAATCGTACCAGCTC
GTTTCTTTTAACACCCCGGATTGTTTATTAATGTGCCAATTTTTCCTTGT
GGAGCTACTGCAACAAA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAGCATCCTTCATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAAA
AAAAAATTAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACCCTTTCATTGTTGGTGGGATGGCAAGCTATACTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTATTACTGGAGGATCCAGCAATACCT
CTCCTGGGCATATGTCCAGAAGGTGTTCCAATTAGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTTAAAAGATGAATTTATGAAATTC
CTAGGCAAATGGATGGACCCAGAGGGCATCATCCTGAGTGAGGTAACTCA
ATCACAAAAGAACTCACATGATATGCACTCACTGATAAATGGATATTAGC
CTAGAAACTTAGAATACCCAAGGTACAATTTGCAAAACACATGAAACTTA
AGAAGAAAGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_k18.b1 MSMg01no121_k18.b1 CHROMAT_FILE:
MSMg01no121_k18.b1 PHD_FILE: MSMg01no121_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:31 2005
         (153 letters)



>mm_chr15_65096378_65096928
          Length = 551

 Score =  246 bits (127), Expect = 6e-70
 Identities = 146/153 (95%), Gaps = 2/153 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaagtgagtggaaacgtgtgatagaacaaaacaccacagacttctctattctgtattat 60
           |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 351 gtaagtgagtggaaacgtgtgatagaacaaaacagcagagacttctccattctgtattat 292

                                                                       
Query: 61  tgctgaggccatctcatgtgttgctagaatttgatctccttgatggagaaacccatggaa 120
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgctgaggccatctcatgtgtaactagaatttgatctccttgatggagaaacccatggaa 232

                                            
Query: 121 aattatccacttctattctgggagcccaaggtc 153
           |||||||||||||  ||||||||||||||||||
Sbjct: 231 aattatccacttc--ttctgggagcccaaggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 551
Length adjustment: 8
Effective length of query: 145
Effective length of database: 543
Effective search space:    78735
Effective search space used:    78735
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)