BAC Information

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BAC

Clone NameMSMg01-122H07
Chromosome15 (Build37)
Map Location 64,888,760 - 64,889,301
singlet/doubletsinglet
Overlap genenone
Upstream gene0910001A06Rik, Ddef1, Adcy8, LOC268812
Downstream geneLOC100040790, LOC665836, C920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122H07.T7 (MSMg01no122_h07.b1)MSMg01-122H07.TJ (MSMg01no122_h07.g1)
ACCAG332315AG332316
length1,1221,120
length of high quality
(start - end)
727 (121 - 847)301 (460 - 760)
definitionCHROMAT_FILE: MSMg01no122_h07.b1 PHD_FILE: MSMg01no122_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:55 2005CHROMAT_FILE: MSMg01no122_h07.g1 PHD_FILE: MSMg01no122_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATATTTNNNAACACTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGC
GGAATTCAACATAGTCTATAACACTTATTCATTTGGTAATTTTTCTGCAT
GTTTTGTAAAACACTAATGAATCTTTACTTACTTCCCACCACAGTCTTTT
CTTTATTTTAATATTTTTGAACTACCTGAATAAATGTGAACTCCCCAAAA
CCTTTCTTAGGAAAGCAGAACTCAAATTGAAAAGGTTGATCAAAGTCCCC
TCTTCTAAGATTATGGAAATTAATCAGAAATGGGTCTCTTTAGAAACATT
TTTATTGTAATAGGGAGAACACGAGGTTGGATCAATGGCTCAACATTTGA
GAGAGTAGTCTGCTACCACAGAGGACCTGAGTTTGGTTCCCAGTATTCAT
CCTGAGTGGCACACAACCACTGGTAACTCTAATACCAAGGAATTCGATAT
GTCTGTGAGTCCACGGACACTCACAAACATATTTACAAACCCACACAGAG
ACATGTACGCATGCACACTGTTCAAAATAAAAAATACACCTTTAAAAATA
AAAGAAAAGTTGCAATAGACTTCAGTTAAAACCAATGAAAATGTACTCTT
CTTGATGCTTCTTTTTCTGCTTCTCATCTTCAAAGTCTGATGCATCCAGC
CCCATTGCCTAGAAGAATGTCTGAACTCCGAGAAAATGTCACCTATTTTC
ATAGCACTTATAACAGGGAATTACCCACAGGCAGTCAAAAATAGACAGAC
ATACCCTAAAACCATAGTGTAATATGAGTCATTTCTGTACAATTTGATTC
TCCTCCCTAACTTCCTACAAACAAACAAACAAACAAACAAAAAAACCTCT
AAAGAGTCACCTGTGATTTCAAGATAGTGCAGAGATCAATCAATCTCAAT
CCCAGATCCTCCATTAGGATTCACCCACAGCAAGTGAAGTTTCTTCAACA
AACTCACAAAAAAATGACTTTTTCTGAATGAATGTTGAAAAAAACTCCCT
GGTTGTATGAACTTGGAAAGGTAATCCTCTGGTTAGCCCCAAGCTTCCGA
GAGCCCTTTTAAAACTGCCCCAAGGGGAACTTTTCCCGGGGGGAATTCCA
AAAAATACAAATATTCTCCCCC
GGATTTTTNNNNAACAATGGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAGCCCCACAAAAANGGAGA
GGAAGGGGGNNCNCCCTTTAAAAACCCTTAANTGNTGGNTCTAATATGGC
TACAGTTGGTAGTCTCCACATTCTTTAGGGTAAGAAACCAACATTTGGGA
CACATGAAGTGGGTTATGGTTTCTTTGGAAAGTCAGTTGTTCTAGATGGT
GTTTTGCTGGGAAAACATGTGAAGGGATGTTTTCCAGAAGCTGACACAGG
TGAGAGGATGTTTCTTTTTTTTCCCCATTTTTTATTAGGTATTTAGCTCA
TTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCT
TTTTTTCAAAGNTNGGAGCTGAGAGGATGTTTCATTAAAGCAGACACGTG
AATTATCATTTTGCTTAAGCAGTCACAGGTGTAAAGATGTTTTGCCAAAG
CAAGTACATGAAAGGACGAATGATGAATGATTCTTTGCTAATGACATAAA
TGTATTTGTTCACCTTACTTTGAGTATCTGAGCTCTGACATGATTTCACA
GACAGAAAACCAAAAAACTTCTGGTGTTGTTCTGGTGGCTTCTTGCCACT
TCTGTGGACTCAGGCCAATTGGCAGAGTGAGGTCAGCTGATACAGACTCA
CATGGAGTTTGGCTAAGGCAGACTCATGTGCTGAGGGAAGAAACATGGTG
AGGCAAGACCTGTGTTATTATACGTGATGTTTGGAGGGAGGATAAATAGG
ACTAATAGGACCGCGATGGAAGGAGGGCTTGCATAGCTAGCTTTGCAATG
CTTTCTGGTCCCAAATCTTCACTGTTCGTTGCTTCCTTGAGAGAAGCAAG
CCAGAGAACTTCTCCTGGGGTCTCTGTTGGTCTTAACCTCCCCTGTTGAC
TTGTGGCAATTTGGCCTGAAGCCTTGGCTGTTCTCCGCTAGGGCCATGCC
CCCTGCTGCCTGATTCCGCGTTCAACTATTTCGAACCCTACCTGGACCTG
GACACCGCTTGGTATATTTCCCTGAAAATGGTTTTGGGAAATAAATATCA
ATTCGGTCTGCCTGCCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_h07.b1 MSMg01no122_h07.b1 CHROMAT_FILE:
MSMg01no122_h07.b1 PHD_FILE: MSMg01no122_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:55 2005
         (727 letters)



>mm_chr15_64888177_64889301
          Length = 1125

 Score =  899 bits (465), Expect = 0.0
 Identities = 524/547 (95%), Gaps = 10/547 (1%)
 Strand = Plus / Minus

                                                                        
Query: 183  tattgtaatagggagaacacgaggttggatcaatggctcaacatttgagagagtagtctg 242
            |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1125 tattataatagggaaaacacgaggttggatcaatggctcaacatttgagagaatagtctg 1066

                                                                        
Query: 243  ctaccacagaggacctgagtttggttcccagtattcatcctgagtggcacacaaccactg 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ctaccacagaggacctgagtttggttcccagtattcatcctgagtggcacacaaccactg 1006

                                                                        
Query: 303  gtaactctaataccaaggaattcgatatgtctgtgagtccacggacactcacaaacatat 362
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1005 gtaactctaataccaaggaattcggtatgtctgtgagtccacggacactcacaaacatat 946

                                                                        
Query: 363  ttacaaacccacacagagacatgtacgcatgcacactgttcaaaataaaaaatacacctt 422
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 945  ttacaaacccacacagagacatgtacgtatgcacactgttcaaaataaaaaatacacctt 886

                                                                        
Query: 423  taaaaataaaagaaaagttgcaatagacttcagttaaaaccaatgaaaatgtactcttct 482
            ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 885  taaaaattaaagaaaagttgtgatagacttcagttaaaaccaatgaaaatgtactcttct 826

                                                                        
Query: 483  tgatgcttctttttctgcttctcatcttcaaagtctgatgcatccagccccattgcctag 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  tgatgcttctttttctgcttctcatcttcaaagtctgatgcatccagccccattgcctag 766

                                                                        
Query: 543  aagaatgtctgaactccgagaaaatgtcacct---attttcatagcacttataacaggga 599
            |||||||||| || || |||    | ||||||   |||||||||||||||||||||||||
Sbjct: 765  aagaatgtctaaattcagag----t-tcacctcctattttcatagcacttataacaggga 711

                                                                        
Query: 600  attacccacaggcagtcaaaaatagacagacataccctaaaaccatagtgtaatatgagt 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  attacccacaggcagtcaaaaatagacagacataccctaaaaccatagtgtaatatgagt 651

                                                                        
Query: 660  catttctgtacaatttgattctcctccctaacttcctacaaa-caaacaaacaaacaaa- 717
             ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 650  tatttctgtaaaatttgattctcctccctaacttcctacaaaacaaacaaacaaacaaaa 591

                   
Query: 718  caaaaaa 724
            |||||||
Sbjct: 590  caaaaaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1125
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1115
Effective search space:   799455
Effective search space used:   799455
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)