Query= MSMg01no123_h05.b1 MSMg01no123_h05.b1 CHROMAT_FILE:
MSMg01no123_h05.b1 PHD_FILE: MSMg01no123_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:12 2005
(337 letters)
>mm_chr15_100942899_100943635
Length = 737
Score = 466 bits (241), Expect = e-136
Identities = 308/339 (90%), Gaps = 20/339 (5%)
Strand = Plus / Minus
Query: 1 gcttcctttttctctagccatcttagagctagctgctgtatggaatcccagtggatgagc 60
|||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gctttctttttctctagtcaccttagagctagctgctgtatggaatcccagtggatgagc 474
Query: 61 acaggtgtgtgcacacaggtgcatgtgcacaggtggatgcacacaggtgtgtgtacacag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 473 acaggtgtgtgcacacaggtgcatgtgcacaggtggatgcacacaggtgggtgcacacag 414
Query: 121 gtgaat-gagcacag--atggatgcacacaggtgggtgcacacaggtggatagacatagg 177
||| || || || || ||| |||||||||||| ||||||||| || ||
Sbjct: 413 gtggataga-cataggcatg--tgcacacaggtgtgtgcacacaagt-----ga------ 368
Query: 178 catgtgcacacaggtgtgcgcacacaagtgaatgcacacaggtgtgtgcacacaagtgaa 237
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 -a--tgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgcacacaagtgaa 311
Query: 238 tgcacacaggcgtgtgcacacaagtgaatgcacacaggtgtgtgcatccacatttagctt 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgcacacaggtgtgtgcacacaagtgaatgcacacaggtgtgtgcatccacatttagctt 251
Query: 298 tcccattcttccagaggtgcataagcgcaggtgtgtcca 336
|||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcccattcttccagaggtgcataagcgcaggtgtgtcca 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_h05.g1 MSMg01no123_h05.g1 CHROMAT_FILE:
MSMg01no123_h05.g1 PHD_FILE: MSMg01no123_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:12 2005
(271 letters)
>mm_chr15_100784466_100785136
Length = 671
Score = 493 bits (255), Expect = e-144
Identities = 267/271 (98%)
Strand = Plus / Plus
Query: 1 taatgcacggtacagcggtgtatttatagtagtctcacttgagggaaagactgcttaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatgcacggtacagcggtgtatttatagtagtctcacttgagggaaagactgcttaagg 260
Query: 61 atggatctgtatgctaagacttataaagaaaaaattctggaaggatattaaaaaaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggatctgtatgctaagacttataaagaaaaaattctggaaggatattaaaaaaataaa 320
Query: 121 cagcagccaagattaccattggataatagagcagaacaatctagcgttttaaaattctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcagccaagattaccattggataatagagcagaacaatctagcgttttaaaattctag 380
Query: 181 gtgtgcaccattctaaataaaaagctttacttaaaagtgactggcacttggttttgcaag 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgcaccattctaaataaaaagttttacttaaaagtgactggcacttggttttgcaag 440
Query: 241 ggagggcctaaccctccagggacccccagtt 271
||||||||||||||||||||||||||||||
Sbjct: 441 agagggcctaaccctccagggacccccagtt 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
