BAC Information

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BAC

Clone NameMSMg01-123N15
Chromosome15 (Build37)
Map Location 47,634,782 - 47,635,106
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123N15.T7 (MSMg01no123_n15.b1)MSMg01-123N15.TJ (MSMg01no123_n15.g1)
ACCAG333353AG333354
length1,5061,308
length of high quality
(start - end)
61 (40 - 100)326 (134 - 459)
definitionCHROMAT_FILE: MSMg01no123_n15.b1 PHD_FILE: MSMg01no123_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:08 2005CHROMAT_FILE: MSMg01no123_n15.g1 PHD_FILE: MSMg01no123_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCCCCCAGAACATTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCG
GAATTCTCTTTAATCTGTAATTATTAGGCAAACAATGAAAAGAATGTATA
CAAACAGCATTGTAATCCATGGATATTTTGTAAAAGTACAAAGAAATAAA
TATCCCCACCCACAAAACACACCCTCAGTAATCATAAATAGAAATGCAAT
TAAAATCTCATTTTAAGAAAAATATATAAATATATTCCCCAAAAAACCGG
GGACCTAAATTCGGGCAAAAAAAAGCCTTAAAATTTTAAAAACGGTAAGG
GGAAAGGGGCAACCCTTCCAAATCCCCCCGGGGAACCAAATTTGGACTAA
TCAAAANCCTCTCGGGAGGCGCCTTTCGCAAACCCCCCTATTTTTTATAA
CGCTGGCAAAATATTTTTTTTTACCCCCCCTTTTTCCCCACCCCCCAAAA
CACATTCTTTCCGGTTTCTTTTTTTTTCCCCCCAAAAAAAAATCCCCCCC
TCCCTCAAAAAAAAAAAGGGGGGTTCCCTTNNTTTTTTNTAATTTCTCTC
TCATGTCAACCCACTACCCCTCTCCCCCCCTCTTTCCCCATCTCCTCCAC
CCCATTCTCTCCTCTCTTTAATCTCTCTCCCTTCCTTTCTCGCTAACCAA
CTCTCTCACTCATCCCNNNNNNNNCTACCNTTCTTCTCTTTCTCTTCCTC
TTCCTCTCCCCCCTCCCTCNNNNCCTGCCNNNTNNCCNNCTCCTCACTCA
TTCCACTCTTCCTCTCTCTTTTTTCCCCTTTCCTCCTCCCCTACTCTCTC
CTCCTCTCCCCAACTCTTCGCCCTCCGCCAGCACACCNNNNCCTCTTCCA
CCCTACACTATATCCTTCTCCCTTATCTTTTTTCTCCTCCCCCTTCTCTC
CTCCTTTCTCTCACATACCCCATCCTTTCCCCTCTACCTCTTCCCTCCTC
CTCCTTAATCTCTTCTAATTCACTCTTTTCTCCTCCTCNCACTCACGTCT
TCCTCACTATCCTCTCCTACCTCCTCCTCTCCACTTTCCCCTTTTCACCT
TTCTCTTCCTCTCTTCCTCCCCCCTCTCTTTCCTTCTCCTCCCTCTTCTC
CCTCTCTCCCTCTCCTCTCCTCCCACCCTCCCTCCTCCTCTTTTTTTTCC
ACTTCCTCCCTTCCATTTCCTCTCTCTCCTTCCCATCCTTCCTTTCACAC
TCCTCTACTTTTTCCCCTCCCTTCTCATCCCTCTCTCCACCTCATTCTTC
CTCTTTCCCACCTCTTACCCCTTTTCTCTCTCCCCATCCTCTCCTCCCCC
TCCTGACTTACAACACCTTTTTTCTNCCNNNNTNNTATTCCCCTCCATCC
TTCTCTCATCCTCTTTTCCTCTTCTCTCCTTTCTCCCCCTTTTCCCACCC
CAACTCTTACTATCTCCTCCTCCCTTCCCTCTCTTCTATCATCCTATCTT
CCTCTTCTTCAACTTCTTCCACCATCTTCCTCTCCTCCTCCTCCTTCTCC
TTTCCC
NAATTCTTTNNNNATAGAAAGTGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAAAAGTACATTTTTATC
TAAATGGTATTCTCTTCTGCCTTATGATATACATTAGTATGTAAAGAGCC
AAGTTTTGTGGAATGAGAATATATTTTTTTGTATACCAGAAAATATCTTG
TGCCACATAAATATTTGACATAGATTTGTACATGATTTTTCTATAAGCAT
AATTCCTTAAGAAATTCATTTTTAATTTATAGTTGAACAATAAATTATTA
CTGAATTTCCTCTGCCTTGTTGGTTCTTTTCCTTGGTTTTGTATTACATT
TAGAAGAAAACGTTCATAGTTAAATGAGGGATTGTATCTAGGAATGTTGA
TTTAAACCCGAATATTATCACTAGTCATGAAACGGATATTTGTAGTTACA
TGAACAACATATATTCTGCTCTGTACTTTACGCGACATCAGCCAATGCAC
TAATCCTTTTCACAACATCTCATCCACAAAATAGTATTGATTTTCTTTAT
CCTGACATGCCCCTGAGAATTTTTGTGAACTTGGCACAAAAAATTGCCTT
CCTATGGATGTCTGTAGCCTACCACCCTGGAGATCCATCTCACATTGGTC
ACAGTCTTCTTGATACCTCCTCTTCTCGTTAAATAACTTTAAGAGCTATA
TTTTATGGAAATTCCTTAATATTTTTTTTACCCTGAATAACTACCTTGGT
TGCCTTTGTTTGCTCCCAAACACCTTCTTCCCTTCCCACAACCCTTACCC
CTGGTTCTCTTGTTCACCAGAATTTCCCAAGATCCATTTTTACTCCGCGT
CTTTCTTCTCTTGTCTTATCATCTTACCTCTCTTGCTCACTCCCTTACTT
TTCCTTTTTTCATATCCCACTCTCTTCCCCTCTTTCCCTTTTATTCCTTT
CCTCCTGCGCGATTTCGTTTTGCTTTTTCCTCTTGCGTTCACACTCCCTA
CAATTTTCCCTCACCACCTCGCTCTTCGCTGCCTTCTTCCCCCTTTTTTC
TTTTTTTCTCCCGCTCTTACTCTCCTCCTTCTCATCTCTCCTTGCTTATT
CCTCTCTTCCTTGTCCCCCTCTCCTTCTTATTCTTTTACTTCCTCCTGTC
TCTAACTTCTTCTATGTCTCCCTCTCTTTCTTGCTTTTCCCTTCTCTCTT
CTCTCTTTCTTCTANTCTCTTGGTATCTCCTAGCATCCACCCCTTCGATC
TTCTTNTTCTCTCTTCTCTTCTTTCCCTTTCATTCTCCTCCCTACAACTC
CTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_n15.g1 MSMg01no123_n15.g1 CHROMAT_FILE:
MSMg01no123_n15.g1 PHD_FILE: MSMg01no123_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:08 2005
         (326 letters)



>mm_chr15_47634582_47635306
          Length = 725

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%), Gaps = 1/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtatgtaaagagccaagttttgtggaatgagaatatatttttttgtataccagaaaa 60
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 525 ttagtatgtaaagagccaagctttgtggaatgagaatata-ttttttgtataccagaaaa 467

                                                                       
Query: 61  tatcttgtgccacataaatatttgacatagatttgtacatgatttttctataagcataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatcttgtgccacataaatatttgacatagatttgtacatgatttttctataagcataat 407

                                                                       
Query: 121 tccttaagaaattcatttttaatttatagttgaacaataaattattactgaatttcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 406 tccttaagaaattcatttttaatttatagttgaacaataaattattactgagtttcctct 347

                                                                       
Query: 181 gccttgttggttcttttccttggttttgtattacatttagaagaaaacgttcatagttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gccttgttggttcttttccttggttttgtattacatttagaagaaaacgttcatagttaa 287

                                                                       
Query: 241 atgagggattgtatctaggaatgttgatttaaacccgaatattatcactagtcatgaaac 300
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 286 atgagggattgtatctaggaatgttgatttaaacccgaagagtatcactagtcatgaaac 227

                                     
Query: 301 ggatatttgtagttacatgaacaaca 326
           ||||||||||||||||||||||||||
Sbjct: 226 ggatatttgtagttacatgaacaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 725
Length adjustment: 9
Effective length of query: 317
Effective length of database: 716
Effective search space:   226972
Effective search space used:   226972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)