BAC Information

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BAC

Clone NameMSMg01-124N17
Chromosome15 (Build37)
Map Location 39,475,075 - 39,475,311
singlet/doubletsinglet
Overlap geneRims2
Upstream geneSiah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N17.T7 (MSMg01no124_n17.b1)MSMg01-124N17.TJ (MSMg01no124_n17.g1)
ACCAG334104AG334105
length1,0861,258
length of high quality
(start - end)
238 (53 - 290)165 (227 - 391)
definitionCHROMAT_FILE: MSMg01no124_n17.b1 PHD_FILE: MSMg01no124_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:30 2005CHROMAT_FILE: MSMg01no124_n17.g1 PHD_FILE: MSMg01no124_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAACGCGTCTTCTTCATCAACTTCCCACTGTTGCTCAAACGAGTCCTG
TAGGTAGTTAAACCAATTGCCTAAAAAAAAAAATCCTGCACATATTCAGA
TATTTAGAAGTTTCTCACATTTAGTAAGGATATTCCGGCTTCTTTTAAAG
AAAGCATGTCATCTTGACAGTATTAAAGCTGAAAATCACATTGGCTTTTC
TTTTTAAAGTCTCTTATTTAGTTTTACTTAGTTTTCTTTGTCAAGTTCAG
AGTCTATGGAAAAGTTTGTTTAACAAATGGCCTTCCTCTTTCAGGTGTTC
TTTCTATAAGATCTGTTTGTATGAAGGAAGATAGACTATTCCTTAGTATT
CTTTTATAAATCTTATCCTCACCCCTCCCCAGGGCTCAGCTTTATCTCAA
AAACACTTCCTTCGTTGTTTTCAAATGCCAGGATTTCCTTGTTTATTGCA
TCACAGGACTTCCCTATGGCACCGGCTACTCCAGTAGATCACTAAGCATT
TTTTGATAATCATATAATATCCCCTATATAAGGCGCTCTTCAATTTTAAA
CAGTCCATTTCTTCTAATTATTCACAAGGCAGTTTAAAGAATTATTCCTA
TGAACCACATTTCCCGAGACTTATGCATGTTCTCCATCCAGCTAGGAGAA
AATCACTATAGCGCACAGCTCGAAGCTTATTTAACACCTGTCACTCAAAA
GTTTACAACTGTCTCCTGAAGCGCCTAATGATTGCAGGTGTGTGGAACAT
GTCCCTGCTGAAATTTCAGCCTCCCTGGGACAGAAATTAATGCAACTCCG
CACACATCATGGCATCCCGTAACTGGTAAACAAAACCTTTGACTAATTCT
TACAGTATAACTGGTTGGAATCTGTTACACTTAGGGTAAAAAAACTCTTC
AGTTTAAATTTTTCCTTTATGGTCCCTCCATAATGTATCCTGTCTCTACT
CTGTTGATAACAATGCTGTTGTCAACTATCCCCTTCACAAGTAACCGTCT
CTTACTCTCACCAATTTACAAACCGCTCGCCTTCTCTTCCCCTCAATAGG
AACCACTCCCCTATCTCTCAAATTGAATAACTTTGT
TCTTTAACATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACTTTTAAATTGCTTTATGAAGGGACTTAGTGCTATA
AACTTCTCTTAAAAGAACTGNTTTAATTGTGTCTCATAAGTTTGGGTATG
TTGTGCCTTCATTTTCATTGAATTGTATCCCGTCTTTAATCTCTGTCTTT
TCTCTGACCCATGGGTCATTAAGAAAAGTGTTTTCAGTTTCTATGAGTAT
GTAGGCTTTCTATTGTTTTTGTTGTTGTTGAAGTCCAGATTTAATCAATG
GTAGTCTGATATGATACAAGGGGTTATTTCAATTTTCTTACATCTCTTGA
GGATCTTTTTTATGGTCAACTTTTAGGAAAGCTCCATGAAGTTTTTTTAA
TAAGGTATAATCTTTTATGTTTGGTTGAAATGTACCTTAGATATTTTTTT
TTCCCCCCCCATTCATAACCTGTGTTAATAAAAAAAAAGGGGGATTTAGT
TTATGTCTCTATAACCTTTCTATTGATGAGAGTGGGGTATTGAAATTAAT
GTGTGGGATTCCATATGTGATTTAAGCTTTAATAATATATTTTATGAATG
TATATGCCTTTGCATTTGAGGTATAAATGTTCAGAACTGATATGTCATCT
TGATGGACTTTTTCCTTTGATGAGTATAAAATGATCTTCTGTATCCCTTT
TGATTAATTTTGGAAAAAAGATTATTTAATTAGATATTAAAATAGTTTAT
TATAATTAAAATTCTTTGATATTATTTACTTGAAAATCCGTTTTGCATTC
CTTTATCTTTGAAGGTAGTATTTTTGTTTATTAATAAAGTGTATTTTTGT
GGTGTATCAAAATGATGATATCCTGTTTTATTCATTCACTCCAATTAATT
AGTTGTTTTTTCTAATTGGTTGGTATAGATTTCATTTGATTTTGATAAAT
ATTAAATGGTCAAATGAATTATTCATTTAAATTTGTATTTTTTTATAGGG
TTATATTATTTTGTGGTATTTTTGAGAAGTAATCTAAAATTTTTTTCCTT
ATTTAATTTTTCGTGGGTAAAAATATATAATTTTTTTTGGAATTTTTCTT
TGGATAATTTTTATAGGAAGTTTAATTTTGTTTGTTGTAAATATTTTTTT
TTTAAAAAATTTCCTTTTTTGCTTGTGACTATATTGCTAATAATAATATG
GTGTTTAAAATTACATTTTTTGTATTGTTAAAATAATTATCTATTTAATC
TTTAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n17.b1 MSMg01no124_n17.b1 CHROMAT_FILE:
MSMg01no124_n17.b1 PHD_FILE: MSMg01no124_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:30 2005
         (238 letters)



>mm_chr15_39474875_39475513
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%), Gaps = 1/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtagttaaaccaattgcctaaaaaaaaaaa-tcctgcacatattcagatatttagaagt 59
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 ggtagttaaaccaattgtctaaaaaaaaaaattcctgcacatattcagatatttagaagt 378

                                                                       
Query: 60  ttctcacatttagtaaggatattccggcttcttttaaagaaagcatgtcatcttgacagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttctcacatttagtaaggatattccggcttcttttaaagaaagcatgtcatcttgacagt 318

                                                                       
Query: 120 attaaagctgaaaatcacattggcttttctttttaaagtctcttatttagttttacttag 179
            |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 317 gttaaagctgaaaatcacattggcttttctttttagagtctcttagttagttttacttag 258

                                                                    
Query: 180 ttttctttgtcaagttcagagtctatggaaaagtttgtttaacaaatggccttcctc 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttctttgtcaagttcagagtctatggaaaagtttgtttaacaaatggccttcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space:   144270
Effective search space used:   144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)