BAC Information

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BAC

Clone NameMSMg01-124P18
Chromosome15 (Build37)
Map Location 86,082,192 - 86,254,887
singlet/doubletdoublet
Overlap geneTbc1d22a
Upstream geneFbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124P18.T7 (MSMg01no124_p18.b1)MSMg01-124P18.TJ (MSMg01no124_p18.g1)
ACCAG334194AG334195
length1,1001,019
length of high quality
(start - end)
225 (91 - 315)139 (134 - 272)
definitionCHROMAT_FILE: MSMg01no124_p18.b1 PHD_FILE: MSMg01no124_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:50 2005CHROMAT_FILE: MSMg01no124_p18.g1 PHD_FILE: MSMg01no124_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,254,668 - 86,254,887)(86,082,192 - 86,082,330)
sequence
CATTATTNNNGGGCATTTCGGCGCTATAGACTCCTATANGGAGAGGATCC
GCNGGAATTCACCTGGTGAGGTCTGCACCTTAAAACATGGTAGAGAATGT
GTCCTGTCACCAGGAGCCCCTTCCAGGGAACACACTTTGATTTCTATCAC
CTGGCCATTCTGTCAGCTCCAGAAGGTCCCACTCAGGCCAGTGTGCTCTG
TCCTTGGCTCCCTAGGCCAGCACGATGAAGGGGACTCTGCTCTGCAGCTT
CGGAGCACTGTGACCCTGTCTAGTTGATGTGCACCTGAGACTTAGCAGGT
GTGAGATCTGTGAATATGAGCCCTGTTTTATGAATATAAACATGTTGTTT
CTTATAAAAAAGTACCAAACAAAACCCAAAAAAAACAAAAAACCCCTGGG
GAAATTTAGAAAGCTGGCTTTAATTTCTAAAACGGGGGGGAATTAGGGGA
AAATGGGTTTTTTTCCTTGAAAAAAAAAAGTCCCCAATTTTTTCCCCTAA
TTTTTTTTGGTTTAAAGGGCCCCCCCCCCCCTGGGAAAAAAATTTTTTTT
TGGGGGGGCCCTTATCCTGGGGTGTCCCCCCTTTTGGGTCCTAGAAAAAA
TATTTCCCCCGGGGGGGGCCTTTTGGGGGTCCCTTTTTTTTTTCCCCCCC
CCCTTTTTCACAAACTTTTGTGGTTTTCTTTGGTGTAAACCCTCTTGGAA
AAAATTTTGGGTGTGTTTTAAAATACACCCCCCCCCCCCCAACTTTTGGG
GGTTCCCCCTCCCTCTTTTAAAAAATATCCTCTCTCGTTACTCACTCATT
TGTGGGGGTAAAATATTTTTTTTCCCCCCCCCCCCGGGGGGGGTGCCGCC
CCCCTCCTTAATTTTCGTGGCATAAACTCCCTTTCTCCTCCTCAAGGGGG
GGGGGTTCTTTTTTTTTTTTTTTCCCACCGAGGGGGGGTGGTTTCTCCCC
CCCCCCGCCTCGTTGTGTGTTTTTTTTTATTCACCACCTCCCCCCCCCTC
ATAAATAAATCTTTCTTTTTTTTTTTAACATAACAGAAGTAAACTTCATT
CTTTTTTCTTTCCTCTGTTGAATAAATAACAATCATTTCTCCTTTTTTTT

TGTTCTTTTNTTCCCATGGGAGCCGTGCGTCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAACAGGTGGNGAGTGCC
AGGCTGCTGTCACAGGACCCTTGAACTGGCCACCTCATAGGACCCACATT
GCTTTCCAAGATCAGGGGTGGGCTGAGGGTTCTTCTGGTGAGGCCTGTCC
TCTTTGTTGAAGATGTCACTTAAACTTTGTCCCCATATGGCTCTGCTTTT
GTATATGTACGGAAAGAGAAATAGAGCAAGACACAGAGAAGGAGCAAGGA
TGGAGACAGGACAGTGCTAGAGTTAGAGAACGAGAGAGTGCATGAGGGAG
TACAAGGTAGAGAAGCTAAGGAAAAAAGGGGCCCCGAAGGAAGGTGGAAA
AGGGAATGATGGGAAAAGGTGTTTTTTTTAATGTTCTCTCTTTTTTCTCC
CTCCCTCTTCTTTCTTTTCTTTTTGTTTTTTTTATTCTTTCCCCCCCACC
CCTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCTCCCTTTCTTTTCTTTCT
TCTTTTTTCTCCTTTCTCCCTTTCTTCTTTTCTCTAAATAAACACTATAT
TTGGTTTCTTCTTTTTTTCTTTACTTCTCTTCTTCTTTTTTTCTTTTTTT
TATCTTTTTTTAATCCTCTTTCTCTTTCTCTTTATCTTTTCTCTTTTTTT
TCTACTCCTTTCCTCTTCTTCTCTCTTCTTTATCTTCTTATTTTTTTCTC
TTTTTTTTTTTTTTCTCTTCCCTTTCCCCTTTTTCTATCCTTTCCTATTT
CTCTTATCCCTCTCTCATTCTTCTTTCTATCTTTTTTCCCTTTCTTTCAC
TCCTTTTCTTTTTCTTATCTTTCTTCTCATCTTCTTTTTTTCTCCTTCTC
TTCTTTTTCTTTTCTTCTTTCCTTCTCCTTTTCTCTTTCTCCTTCTTATT
CTTCTTTTTTATCTCCTTTTCTCTTTTCTTTTCTCTTTTTCTTCTTTCTT
TCTCTTTTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_p18.b1 MSMg01no124_p18.b1 CHROMAT_FILE:
MSMg01no124_p18.b1 PHD_FILE: MSMg01no124_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:50 2005
         (225 letters)



>mm_chr15_86254468_86255087
          Length = 620

 Score =  354 bits (183), Expect = e-102
 Identities = 214/227 (94%), Gaps = 9/227 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagaatgtgtcctgtcaccaggagcc-c-cttccagggaacacactttgatttctatc 58
           |||||||||||||||||||||||||||| | |  |||||||||||||||||||| |||||
Sbjct: 420 tagagaatgtgtcctgtcaccaggagccgcac--ccagggaacacactttgattcctatc 363

                                                                       
Query: 59  acctggccattctgtcagctccagaaggtcccactcaggccagtgtgctctgtccttggc 118
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 362 acctggccattctgtcagctccagaaggtcccactcaggccagtgtgttctgtccttggc 303

                                                                       
Query: 119 tccctaggccagcacgatgaaggggactctgctctgcagcttcggagcactgtgaccctg 178
           |||||||||||| ||  ||    |||||||||||||||||||||||||||||||||||||
Sbjct: 302 tccctaggccag-accctg----ggactctgctctgcagcttcggagcactgtgaccctg 248

                                                          
Query: 179 tctagttgatgtgcacctgagacttagcaggtgtgagatctgtgaat 225
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctagttgatgtgcacctgagacttagcaggtgtgagatctgtgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 620
Length adjustment: 9
Effective length of query: 216
Effective length of database: 611
Effective search space:   131976
Effective search space used:   131976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no124_p18.g1 MSMg01no124_p18.g1 CHROMAT_FILE:
MSMg01no124_p18.g1 PHD_FILE: MSMg01no124_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:50 2005
         (139 letters)



>mm_chr15_86081992_86082530
          Length = 539

 Score =  261 bits (135), Expect = 1e-74
 Identities = 138/139 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcataggacccacattgctttccaagatcaggggtgggctgagggttcttctggtgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcataggacccacattgctttccaagatcaggggtgggctgagggttcttctggtgagg 260

                                                                       
Query: 61  cctgtcctctttgttgaagatgtcacttaaactttgtccccatatggctctgcttttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cctgtcctctttgttgaagatgtcacttaaactttgtccccatatggctttgcttttgta 320

                              
Query: 121 tatgtacggaaagagaaat 139
           |||||||||||||||||||
Sbjct: 321 tatgtacggaaagagaaat 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)