Query= MSMg01no126_c03.b1 MSMg01no126_c03.b1 CHROMAT_FILE:
MSMg01no126_c03.b1 PHD_FILE: MSMg01no126_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:24 2005
(559 letters)
>mm_chr15_54953363_54954321
Length = 959
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%)
Strand = Plus / Plus
Query: 6 gaattcatactaagaccagtttgtttgcttttggaatgggatctcaccagagttgcccag 65
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatactaagagcagtttgcttgcttttggaatgggatctcaccagagttgcccag 265
Query: 66 cctggcctgtagcttactgactagccgtgctcccttgaactcacagccatccttctgcat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctggcctgtagcttactgactagccgtgctcccttgaactcacagccatccttctgcat 325
Query: 126 cagcctacctactaatgctgtaattgcagggttgtaacactactccagaacagtctcggt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagcctacctactaatgctgtaattgcagggttgtaacactactccagaacagtctcggt 385
Query: 186 ttctttttcgtttgtttttgagacagggttcattttatagccctagccttactacagttt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttctttttcgtttgtttttgagacagggttcattttatagccctagccttactacagttt 445
Query: 246 attatgtagaccaaactggcctccaactcctagagtccacccatctttgcctccctcccg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attatgtagaccaaactggcctccaactcctagagtccacccatctttgcctccctcccg 505
Query: 306 agtagtgggaattaaaagcatgtgccactatgcctggcaagtttgtatttcttataaata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtagtgggaattaaaagcatgtgccactatgcctggcaagtttgtatttcttataaata 565
Query: 366 aaaaaattatacatgccatagaaataagtgcgagttaaatcctttcacagatgccttttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaaaaattatacatgccatagaaataagtgcgagttaaatcctttcacagatgccttttt 625
Query: 426 ttccccctttactaggagcatagactcaggaatggatgtccctgggtacaagtataaaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttccccctttactaggagcatagactcaggaatggatgtccctgggtacaagtataaaca 685
Query: 486 aaagctaattctgcttgatgggggcagtctttcatgtgtgcaaggtcaagaggggggaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaagctaattctgcttgatgggggcagtctttcatgtgtgcaaggtcaagaggggggaac 745
Query: 546 catcttacttttaa 559
||||||||||||||
Sbjct: 746 catcttacttttaa 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_c03.g1 MSMg01no126_c03.g1 CHROMAT_FILE:
MSMg01no126_c03.g1 PHD_FILE: MSMg01no126_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:24 2005
(458 letters)
>mm_chr15_55050819_55051673
Length = 855
Score = 648 bits (335), Expect = 0.0
Identities = 397/445 (89%), Gaps = 43/445 (9%)
Strand = Plus / Minus
Query: 4 ctcaaaagaaatttgggttaagccaaatccttcctcatataaaagagttcatacacgaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcaaaagaaatttgggttaagccaaatccttcctcatataaaagagttcatacacgaaa 386
Query: 64 ctgaaagaatgtgccaaaaataatttatacagagtgttcattgtagaagtaaaatatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 ctgaaagaatgtgccaaaaataatttatacagagtgttcattgtagaagtaaaatataaa 326
Query: 124 atccttctttgagtcaaagttccattagaaaatgaaaaattcagccttagctgagaaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atccttctttgagtcaaagttccattagaaaatgaaaaattcagccttagctgagaaatt 266
Query: 184 agtgctcactctttgcatcccagctcttctccctctgagctccttgggtgctggaccagg 243
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 265 agtgctcactctttgcatcccagc---tctccctctgagctccctgggtgctggaccagg 209
Query: 244 atc----------------------------------------tcgagcataggacttag 263
||| |||||||||||||||||
Sbjct: 208 atctctaacgccggctgccttagccaaggaggccggcattgtttcgagcataggacttag 149
Query: 264 tggacgtggtcttcaaattaaggaagaggggctggagagatggctcagtggttaagagca 323
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tggacatggtcttcaaattaaggaagaggggctggagagatggctcagtggttaagagca 89
Query: 324 ctgactgctctcccaaaggccctgagttcagttcccagcaaccacgtggtggctcacaac 383
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ctgactgctctcccaaaggtcctgagttcagttcccagcaaccacgtggtggctcacaac 29
Query: 384 cgtctgtaatgagattacacgccct 408
| |||||||||||||||||||||||
Sbjct: 28 cctctgtaatgagattacacgccct 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 855
Length adjustment: 10
Effective length of query: 448
Effective length of database: 845
Effective search space: 378560
Effective search space used: 378560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
